org.biojava.app
Class BioGetSeq

java.lang.Object
  org.biojava.app.BioGetSeq

public class BioGetSeq
extends Object

BioGetSeq is a user application for retrieving sequences from flat file databanks which have been indexed according to the Open Bioinformatics Database Access (OBDA) indexing standard. See the BIODATABASE-ACCESS-HOWTO for more information.

Author:

Keith James, Matthew Pocock

Useage:

java org.biojava.app.BioGetSeq	-d dataSource [-n namespace] [-f format]
java org.biojava.app.BioGetSeq	-h

Option:

-d, --dbname	Specifies a symbolic data source
-f, --format	The output format {@biojava.default fasta}
-h, --help	Command-line help
-n, --namespace	Specifies the namespace within which to search {@biojava.default ID}

Constructor Summary

BioGetSeq()

Method Summary

static void

main(String[] argv)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioGetSeq

public BioGetSeq()

Method Detail

main

public static void main(String[] argv)
                 throws Exception

Throws:

Exception