Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement

org.biojava.bio.alignment

Classes to generate and describe sequence alignments.

Uses of AlignmentElement in org.biojava.bio.alignment

Classes in org.biojava.bio.alignment that implement AlignmentElement

class

SimpleAlignmentElement SimpleSimpleAlignment is a simple implementation of AlignmentElement.

Methods in org.biojava.bio.alignment that return AlignmentElement

protected AlignmentElement

FlexibleAlignment.getAE(Object label)

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement

void	FlexibleAlignment.addSequence(AlignmentElement ae) add a new a alignment usings a location to the reference sequence.
void	ARAlignment.addSequence(AlignmentElement ae)