Uses of Class
org.biojava.bio.alignment.SequenceAlignment

Packages that use SequenceAlignment

org.biojava.bio.alignment

Classes to generate and describe sequence alignments.

Uses of SequenceAlignment in org.biojava.bio.alignment

Subclasses of SequenceAlignment in org.biojava.bio.alignment

class	NeedlemanWunsch Needleman and Wunsch definied the problem of global sequence alignments, from the first till the last symbol of a sequence.
class	SmithWaterman Smith and Waterman developed an efficient dynamic programing algorithm to perform local sequence alignments, which returns the most conserved region of two sequences (longes common substring with modifications).