Uses of Class
org.biojava.bio.dp.SimpleMarkovModel

Packages that use SimpleMarkovModel

org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.program.hmmer	Tools for working with profile Hidden Markov Models from the HMMer package.

Uses of SimpleMarkovModel in org.biojava.bio.dp

Subclasses of SimpleMarkovModel in org.biojava.bio.dp

class

ProfileHMM

Uses of SimpleMarkovModel in org.biojava.bio.program.hmmer

Subclasses of SimpleMarkovModel in org.biojava.bio.program.hmmer

class	FullHmmerProfileHMM This is a class for representing the full HMMER generated Profile HMM (including loop states N and C terminal looping states).
class	HmmerProfileHMM This is a class for representing HMMER generated Profile HMM.