Uses of Interface
org.biojava.bio.dp.StatePath

Packages that use StatePath

org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.onehead
org.biojava.bio.dp.twohead

Uses of StatePath in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement StatePath

class

SimpleStatePath A no-frills implementation of StatePath.

Methods in org.biojava.bio.dp that return StatePath

StatePath	DP.generate(int length) Generates an alignment from a model.
abstract StatePath	DP.viterbi(SymbolList[] symList, ScoreType scoreType)

Uses of StatePath in org.biojava.bio.dp.onehead

Methods in org.biojava.bio.dp.onehead that return StatePath

StatePath

SingleDP.viterbi(SymbolList[] symList, ScoreType scoreType)

Uses of StatePath in org.biojava.bio.dp.twohead

Methods in org.biojava.bio.dp.twohead that return StatePath

StatePath

PairwiseDP.viterbi(SymbolList[] seqs, ScoreType scoreType)