Uses of Package
org.biojava.bio.gui.sequence

Packages that use org.biojava.bio.gui.sequence

org.biojava.bio.gui.sequence

Graphical displays of biological sequences and associated annotations.

Classes in org.biojava.bio.gui.sequence used by org.biojava.bio.gui.sequence

AbstractBeadRenderer
AbstractBeadRenderer is a an abstract base class for the creation of FeatureRenderers which use a 'string of beads' metaphor for displaying features.

AbstractPeptideDigestRenderer
A SequenceRenderer that renders a set of Features that match a FeatureFilter in such a way that they do not overlap in the display.

BasicFeatureRenderer

BeadFeatureRenderer
BeadFeatureRenderers use a 'string of beads' metaphor for displaying features.

CircularFeatureRenderer

CircularRenderer
Render information from a CircularRendererContext onto a graphics context.

CircularRendererContext
A context providing information for rendering sequences into circular coordinate systems.

FeatureLabelRenderer.LabelMaker

FeatureRenderer

FeatureSource
A closure that allows AbstractPeptideDigestRenderer implementations to obtain the features of the rendered sequence.

FilteringRenderer

GlyphFeatureRenderer
A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter

ImageMap
ImageMap represents a collection of image map hotspots.

ImageMap.HotSpot
HotSpots represent an image map hotspot.

ImageMapRenderer
ImageMapRenderers create strings representing Features suitable for use in HTML image maps.

LabelRenderer
The interface for things that can render labels for a line of information about a sequence.

LayeredRenderer
LayeredRenderer handles the lane offsets for MultiLineRenders.

MultiLineRenderer
MultiLineRenderer is a SequenceRenderer which collects a number of other SequenceRenderers each of which render their own view of a Sequence.

OverlayMarker
This is a dummy interface to permit identification of renderers whose output is to be overlaid along the lines of the Marker Interface pattern.

PairwiseRenderContext
PairwiseRenderContext encapsulates information required for the rendering of a pair of sequences.

PairwiseSequenceRenderer
PairwiseSequenceRenderers render information about the relationship between two sequences.

RectangularBeadRenderer
RectangularBeadRenderer renders features as simple rectangles.

SequenceRenderContext
A context within which sequence information may be rendered.

SequenceRenderContext.Border
The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence.

SequenceRenderer
The interface for things that can render a line of information about a sequence.

SequenceRendererWrapper
An implementation of SequenceRenderer that delegates rendering to another renderer.

SequenceViewerEvent
An event indicating that a mouse gesture was recognised within a widget that renders sequences.

SequenceViewerListener

SequenceViewerMotionListener

SixFrameRenderer
Class that handles drawing in six frames for other classes.

ZiggyFeatureRenderer
A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.