Uses of Class
org.biojava.bio.program.das.dasalignment.Alignment

Packages that use Alignment

org.biojava.bio.program.das.dasalignment

Uses of Alignment in org.biojava.bio.program.das.dasalignment

Methods in org.biojava.bio.program.das.dasalignment that return Alignment

Alignment	DASAlignmentXMLResponseParser.getAlignment(int position) Returns Alignment at position ...
Alignment[]	DASAlignmentClient.getAlignments() Returns the alignments.
Alignment[]	DASAlignmentXMLResponseParser.getAlignments() Returns the alignments.
Alignment[]	DASAlignmentCall.getAlignments() connect to a DAS alignment service and retreive alignments.
Alignment[]	DASAlignmentClient.getAlignments(String query_) Returns the alignments.
Alignment[]	DASAlignmentCall.getAlignments(String query) connect to a DAS alignment service and retreive data.
Alignment[]	DASAlignmentCall.parseDASResponse(InputStream inStream) parse the Response of a DAS ALignment service and return a biojava Alignment object.