Uses of Interface
org.biojava.bio.program.gff.GFFRecord

Packages that use GFFRecord

org.biojava.bio.program.gff

GFF manipulation.

Uses of GFFRecord in org.biojava.bio.program.gff

Classes in org.biojava.bio.program.gff that implement GFFRecord

class

SimpleGFFRecord A no-frills implementation of a GFFRecord.

Methods in org.biojava.bio.program.gff that return GFFRecord

protected GFFRecord

GFFParser.createRecord(GFFDocumentHandler handler, List aList, String rest, String comment) Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.

Methods in org.biojava.bio.program.gff with parameters of type GFFRecord

boolean	GFFRecordFilter.accept(GFFRecord record) Return whether or not to accept record.
boolean	GFFRecordFilter.AcceptAll.accept(GFFRecord record)
boolean	GFFRecordFilter.SequenceFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.StrandFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.SourceFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.FeatureFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.FrameFilter.accept(GFFRecord record)
boolean	GFFRecordFilter.NotFilter.accept(GFFRecord record)
void	GFFEntrySet.add(GFFRecord record) Add a GFFRecord to the end of this set.
void	GFFDocumentHandler.recordLine(GFFRecord record) A record line has been encountered.
void	GFFWriter.recordLine(GFFRecord record) Prints record to the PrintWriter.
void	GFFFilterer.recordLine(GFFRecord record) Only forward the GFFRecords that match a filter.

Constructors in org.biojava.bio.program.gff with parameters of type GFFRecord

SimpleGFFRecord(GFFRecord rec)
Create a new SimpleGFFRecord from GFFRecord object