Uses of Interface
org.biojava.bio.program.homologene.SimilarityType

Packages that use SimilarityType

org.biojava.bio.program.homologene

Support classes for Homologene data.

Uses of SimilarityType in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement SimilarityType

static class

SimilarityType.PlaceHolder

Fields in org.biojava.bio.program.homologene declared as SimilarityType

static SimilarityType	SimilarityType.CURATED
static SimilarityType	SimilarityType.MULTIPLE
static SimilarityType	SimilarityType.TWIN

Methods in org.biojava.bio.program.homologene that return SimilarityType

SimilarityType	OrthoPair.getSimilarity() gets the second orthologue in the orthology relationship.
SimilarityType	SimpleOrthoPair.getSimilarity()

Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType

OrthoPair	SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
OrthoPair	HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) Create a computed orthology entry.

Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType

OrthoPairFilter.BySimilarityType(SimilarityType type)

SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
constructor for the computed form of an orthology relationship.