Uses of Package
org.biojava.bio.program.homologene

Packages that use org.biojava.bio.program.homologene

org.biojava.bio.program.homologene

Support classes for Homologene data.

Classes in org.biojava.bio.program.homologene used by org.biojava.bio.program.homologene

AbstractOrthologueSet

AbstractOrthoPairCollection
An abstract implementation of the OrthoPairCollection interface.

AbstractOrthoPairSet
represents the Homologene Group.

DuplicateTaxonException

HomologeneBuilder
an interface for Homologene dataset Builders

HomologeneDB
Homologene is a NCBI dataset that curates sets of orthologues from the reference model organisms.

Orthologue
this entry contains data about the orthologue.

OrthologueFilter

OrthologueSet
Interface for classes that store and manipulate orthologues.

OrthologueSet.Iterator
An iterator for the contents of an OrthologueSet.

OrthoPair
Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.

OrthoPairCollection
Interface for a Set of OrthoPairSets

OrthoPairCollection.Iterator
Iterator for a OrthoPairCollection

OrthoPairFilter

OrthoPairSet
represents the Homologene Group.

OrthoPairSet.Iterator

OrthoPairSetFilter

SimilarityType
Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.

SimpleOrthoPairCollection

Taxon