Uses of Package
org.biojava.bio.program.tagvalue

Packages that use org.biojava.bio.program.tagvalue

org.biojava.bio	The core classes that will be used throughout the bio packages.
org.biojava.bio.annodb	Databases of generic structured data (annotation) objects.
org.biojava.bio.program.formats	Experimental parsers using the tagvalue framework.
org.biojava.bio.program.tagvalue	Process files as streams of records, each with tags with values.
org.biojava.bio.program.unigene	Objects for representing Unigene clusters.

Classes in org.biojava.bio.program.tagvalue used by org.biojava.bio

ChangeTable
A mapping between keys and actions to turn old values into new values.

PropertyChanger
Interface for objects that change tag names or properties systematically.

Classes in org.biojava.bio.program.tagvalue used by org.biojava.bio.annodb

Index2Model

ParserListener
ParserListener is an immutable pairing of a parser and listener.

TagValueListener
An object that wishes to be informed of events during the parsing of a file.

Classes in org.biojava.bio.program.tagvalue used by org.biojava.bio.program.formats

ChangeTable.Changer
Callback used to produce a new value from an old one.

ParserListener
ParserListener is an immutable pairing of a parser and listener.

TagValueListener
An object that wishes to be informed of events during the parsing of a file.

Classes in org.biojava.bio.program.tagvalue used by org.biojava.bio.program.tagvalue

BoundaryFinder

ChangeTable
A mapping between keys and actions to turn old values into new values.

ChangeTable.Changer
Callback used to produce a new value from an old one.

ChangeTable.Splitter
Callback used to produce a list of values from a single old one.

Index2Model

LineSplitParser
A parser that splits a line into tag/value at a given column number.

ParserListener
ParserListener is an immutable pairing of a parser and listener.

PropertyChanger
Interface for objects that change tag names or properties systematically.

SimpleTagValueWrapper
Helper class to wrap one TagValueListener inside another one.

StateMachine.BasicState
Implementation of a State in a state machine

StateMachine.State
Interface for a State within this StateMachine

StateMachine.Transition
class to represent a State Transition

StateMachine.TransitionTable
Table of Transition destination States and their corresponding Tags.

TagValue
Utility class for representing tag-value pairs for TagValueParser implementors.

TagValueContext
Communication interface between Parser and a TagValueListener that allows listeners to request that a parser/listener pair be pushed onto the stack to handle the current tag.

TagValueListener
An object that wishes to be informed of events during the parsing of a file.

TagValueParser
Tokenize single records (lines of text, objects) into a tag and a value.

TagValueWrapper
Interface for TagValueListeners that wrap other TagValueListeners

Classes in org.biojava.bio.program.tagvalue used by org.biojava.bio.program.unigene

ParserListener
ParserListener is an immutable pairing of a parser and listener.

TagValueListener
An object that wishes to be informed of events during the parsing of a file.