Uses of Interface
org.biojava.bio.seq.FeatureRealizer

Packages that use FeatureRealizer

org.biojava.bio.seq	Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.

Uses of FeatureRealizer in org.biojava.bio.seq

Classes in org.biojava.bio.seq that implement FeatureRealizer

class

SimpleFeatureRealizer FeatureRealizer which uses a lookup table to map template classes to implementations.

Methods in org.biojava.bio.seq with parameters of type FeatureRealizer

static ViewSequence

SequenceTools.view(Sequence seq, FeatureRealizer fr) Creates a new Sequence with the data of the old but with a different FeatureRealizer that will be applied to new Features.

Constructors in org.biojava.bio.seq with parameters of type FeatureRealizer

CircularView(Sequence seq, FeatureRealizer fr)

SimpleFeatureRealizer(FeatureRealizer fallBack)

Uses of FeatureRealizer in org.biojava.bio.seq.impl

Fields in org.biojava.bio.seq.impl declared as FeatureRealizer

static FeatureRealizer

FeatureImpl.DEFAULT Default implementation of FeatureRealizer, which wraps simple implementations of Feature and StrandedFeature.

Methods in org.biojava.bio.seq.impl that return FeatureRealizer

FeatureRealizer

SimpleSequenceFactory.getFeatureRealizer() Returns the FeatureRealizer set by "setFeatureRealizer".

Methods in org.biojava.bio.seq.impl with parameters of type FeatureRealizer

void	SimpleSequenceFactory.setFeatureRealizer(FeatureRealizer fr) Set the FeatureRealizer used by new sequences created by this factory.

Constructors in org.biojava.bio.seq.impl with parameters of type FeatureRealizer

SimpleSequence(SymbolList sym, String urn, String name, Annotation annotation, FeatureRealizer realizer)
Create a SimpleSequence using a specified FeatureRealizer.

ViewSequence(Sequence seq, FeatureRealizer fr)
Construct a view onto a sequence, using a specific FeatureRealizer.