org.biojava.bio.seq.io
Class ProteinRefSeqProcessor

java.lang.Object
  org.biojava.bio.seq.io.SequenceBuilderFilter
      org.biojava.bio.seq.io.GenbankProcessor
          org.biojava.bio.seq.io.ProteinRefSeqProcessor

All Implemented Interfaces:

SeqIOListener, SequenceBuilder, ParseErrorSource

Deprecated. Use org.biojavax.bio.seq.io framework instead

public class ProteinRefSeqProcessor
extends GenbankProcessor

Class description

Author:

Greg Cox

Nested Class Summary

static class

ProteinRefSeqProcessor.Factory Deprecated. Factory which wraps sequence builders in a ProteinRefSeqProcessor

Field Summary

Fields inherited from class org.biojava.bio.seq.io.GenbankProcessor

features, PROPERTY_GENBANK_ACCESSIONS

Constructor Summary

ProteinRefSeqProcessor(SequenceBuilder theDelegate)
Deprecated.

Method Summary

Methods inherited from class org.biojava.bio.seq.io.GenbankProcessor

addParseErrorListener, addSequenceProperty, endSequence, notifyParseErrorEvent, removeParseErrorListener

Methods inherited from class org.biojava.bio.seq.io.SequenceBuilderFilter

addFeatureProperty, addSymbols, endFeature, getDelegate, makeSequence, setName, setURI, startFeature, startSequence

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinRefSeqProcessor

public ProteinRefSeqProcessor(SequenceBuilder theDelegate)

Deprecated.