org.biojava.bio.seq.io.agave
Class AGAVEAssemblyHandler

java.lang.Object
  org.biojava.bio.seq.io.agave.StAXContentHandlerBase
      org.biojava.bio.seq.io.agave.StAXFeatureHandler
          org.biojava.bio.seq.io.agave.AGAVEAssemblyHandler

All Implemented Interfaces:

SequenceHandler, StAXContentHandler

public class AGAVEAssemblyHandler
extends StAXFeatureHandler
implements SequenceHandler

Author:

David Huen, Hanning Ni Doubletwist Inc

Field Summary

static StAXHandlerFactory

AGAVE_ASSEMBLY_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures

Method Summary

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_ASSEMBLY_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_ASSEMBLY_HANDLER_FACTORY