Uses of Interface
org.biojava.bio.seq.io.agave.AGAVEAnnotFilter

Packages that use AGAVEAnnotFilter

org.biojava.bio.seq.io.agave

Classes for converting between AGAVE XML and BioJava objects.

Uses of AGAVEAnnotFilter in org.biojava.bio.seq.io.agave

Classes in org.biojava.bio.seq.io.agave that implement AGAVEAnnotFilter

class	Agave2AgaveAnnotFilter Dumping the data from biojava with source of agave into agave format
class	Embl2AgaveAnnotFilter Map EMBL data into AGAVE format
class	SimpleAnnotFilter Basic implementation of AGAVEAnnotFilter

Fields in org.biojava.bio.seq.io.agave declared as AGAVEAnnotFilter

protected AGAVEAnnotFilter

AgaveWriter.mAnnotFilter The AnnotationMap to use for getting AGAVE XML attributes from a Sequence Annotation.

Methods in org.biojava.bio.seq.io.agave that return AGAVEAnnotFilter

AGAVEAnnotFilter

AGAVEAnnotFilterFactory.getInstance()

Constructors in org.biojava.bio.seq.io.agave with parameters of type AGAVEAnnotFilter

AgaveWriter(AGAVEAnnotFilter filter)
Construct with data source specific annotation to attribute mapping.