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| Packages that use org.biojava.bio.seq.io.agave | |
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| org.biojava.bio.seq.io.agave | Classes for converting between AGAVE XML and BioJava objects. |
| Classes in org.biojava.bio.seq.io.agave used by org.biojava.bio.seq.io.agave | |
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| AGAVEAnnotFilter
This interface defines mapping from BioJava into AGAVE format. |
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| AGAVEAnnotFilterFactory
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| AGAVEBioSeqCallbackItf
An interface that can be tested for by nested handlers when trying to do a callback. |
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| AGAVECallbackItf
An interface that can be tested for by nested handlers when trying to do a callback. |
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| AGAVEChromosomeCallbackItf
An interface that can be tested for by nested handlers when trying to do a callback. |
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| AGAVEContigCallbackItf
An interface that can be tested for by nested handlers when trying to do a callback. |
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| AGAVEDbId
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| AGAVEDbIdCallbackItf
this is the interface implemented by several classes |
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| AGAVEDbIdPropCallbackItf
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| AGAVEEvidenceCallbackItf
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| AGAVEFeatureCallbackItf
An interface that can be tested for by nested handlers when trying to do a callback. |
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| AGAVEIdAlias
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| AGAVEIdAliasCallbackItf
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| AGAVEMapLocation
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| AGAVEMapPosition
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| AGAVEMatchRegion
match_region |
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| AGAVEProperty
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| AGAVEQueryRegion
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| AGAVERelatedAnnot
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| AgaveWriter.Indent
Implements indenting for elements. |
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| AGAVEXref
xref |
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| AGAVEXrefCallbackItf
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| AGAVEXrefs
xrefs |
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| DelegationManager
Interface which exposes delegation services offered by a StAX event source. |
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| ElementRecognizer
This class is copied to agave package Simple interface for filtering SAX/StAX startElement events |
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| SequenceHandler
mark interface |
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| SimpleAnnotFilter
Basic implementation of AGAVEAnnotFilter |
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| StAXContentHandler
Interface for StAX content handlers. |
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| StAXContentHandlerBase
Simple implementation of the StAXContentHandler
interface, with empty implementations for all the methods. |
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| StAXFeatureHandler
StAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler. |
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| StAXHandlerFactory
Factory for StAX content handlers. |
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| StAXPropertyHandler
StAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler. |
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