Uses of Interface
org.biojava.bio.seq.io.StreamParser

Packages that use StreamParser

org.biojava.bio.seq.io	Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.seq.io.game	Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of StreamParser in org.biojava.bio.seq.io

Methods in org.biojava.bio.seq.io that return StreamParser

StreamParser	SymbolTokenization.parseStream(SeqIOListener listener) Return an object which can parse an arbitrary character stream into symbols.
StreamParser	WordTokenization.parseStream(SeqIOListener siol)
StreamParser	CharacterTokenization.parseStream(SeqIOListener listener)

Methods in org.biojava.bio.seq.io with parameters of type StreamParser

protected void

EmblLikeFormat.processSequenceLine(String line, StreamParser parser) Deprecated. Dispatch symbol data from SQ-block line of an EMBL-like file.

Uses of StreamParser in org.biojava.bio.seq.io.game

Methods in org.biojava.bio.seq.io.game with parameters of type StreamParser

void	SequenceContentHandlerBase.setStreamParser(StreamParser parser) assign a StreamParser object to instance.

Uses of StreamParser in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return StreamParser

StreamParser

SoftMaskedAlphabet.CaseSensitiveTokenization.parseStream(SeqIOListener l) The current implementation only supports character parsing.