Uses of Interface
org.biojava.bio.structure.AminoAcid

Packages that use AminoAcid

org.biojava.bio.structure

Interfaces and classes for protein structure (PDB).

Uses of AminoAcid in org.biojava.bio.structure

Classes in org.biojava.bio.structure that implement AminoAcid

class

AminoAcidImpl AminoAcid inherits most from Hetatom.

Methods in org.biojava.bio.structure that return AminoAcid

static AminoAcid	StandardAminoAcid.getAminoAcid(String name) get a standard amino acid.
AminoAcid	Mutator.mutateResidue(AminoAcid oldAmino, String newType) create a new residue which is of the new type.

Methods in org.biojava.bio.structure with parameters of type AminoAcid

static Atom	Calc.createVirtualCBAtom(AminoAcid amino) creates a virtual C-beta atom.
static double	Calc.getPhi(AminoAcid a, AminoAcid b) phi angle.
static double	Calc.getPsi(AminoAcid a, AminoAcid b) psi angle.
static boolean	Calc.isConnected(AminoAcid a, AminoAcid b) test if two amino acids are connected, i.e.
AminoAcid	Mutator.mutateResidue(AminoAcid oldAmino, String newType) create a new residue which is of the new type.