org.biojava.bio.structure.io
Interface StructureIOFile

All Superinterfaces:

StructureIO

All Known Implementing Classes:

PDBFileReader

public interface StructureIOFile
extends StructureIO

interface StructureIOFile extends the StructureIO interface and adds a few File specific methods.

Author:

Andreas Prlic

Method Summary

void	addExtension(String ext) add a known File extension.
Structure	getStructure(String filename) open filename and returns a Structure object.
void	setPath(String path) set path to file / connection string to db.

Methods inherited from interface org.biojava.bio.structure.io.StructureIO

getStructureById

Method Detail

setPath

void setPath(String path)

set path to file / connection string to db.

Parameters:

path - a String specifying the path value

addExtension

void addExtension(String ext)

add a known File extension.

Parameters:

ext - a String ...

getStructure

Structure getStructure(String filename)
                       throws IOException

open filename and returns a Structure object.

Parameters:

filename - a String

Returns:

a Structure object

Throws:

IOException - ...