Package org.biojava.bio.structure.io

Interface Summary

StructureIO	Defines the interface how to access Structure (- PDB file) input,output readers, writers.
StructureIOFile	interface StructureIOFile extends the StructureIO interface and adds a few File specific methods.

Class Summary

DASStructureClient	A DAS client that connects to a DAS structure service and returns a Biojava structure class.
FileConvert	Methods to convert a structure object into different file formats.
PDBFileParser	A PDB file parser.
PDBFileReader	A PDB file parser.
PDBMSDReader	retreive a structure from an installation of the MSD - search database ( http://www.ebi.ac.uk/msd/index.html , http://www.ebi.ac.uk/msd-srv/docs/dbdoc/ )
PDBSRSReader	reads a PDB file from a local SRS installation using getz Actually is the same as PDBFileReader, but instead of reading from a file stream, reads from a buffered stream.

Exception Summary

PDBParseException

An exception during the parsing of a PDB file.