Uses of Interface
org.biojava.bio.symbol.CodonPref

Packages that use CodonPref

org.biojava.bio.symbol

Representation of the Symbols that make up a sequence, and locations within them.

Uses of CodonPref in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement CodonPref

class

SimpleCodonPref a simple no-frills implementation of the CodonPref object that encapsulates codon preference data.

Methods in org.biojava.bio.symbol that return CodonPref

CodonPref	CodonPrefFilter.ByName.getCodonPref()
static CodonPref	CodonPrefTools.getCodonPreference(String id) get the specified codon preference.
static CodonPref[]	CodonPrefTools.readFromXML(InputStream prefStream)
static CodonPref	CodonPrefTools.readFromXML(InputStream prefStream, String name) reads a specified CodonPref from an file.

Methods in org.biojava.bio.symbol with parameters of type CodonPref

void	CodonPrefFilter.put(CodonPref codonPref) handles storage of a CodonPref object
void	CodonPrefFilter.AcceptAll.put(CodonPref codonPref)
void	CodonPrefFilter.ByName.put(CodonPref codonPref)
void	CodonPrefFilter.EverythingToXML.put(CodonPref codonPref)
static void	CodonPrefTools.writeToXML(CodonPref codonPref, PrintWriter writer) write out a specified CodonPref object in XML format.