Uses of Interface
org.biojava.bio.symbol.SoftMaskedAlphabet.MaskingDetector

Packages that use SoftMaskedAlphabet.MaskingDetector

org.biojava.bio.symbol

Representation of the Symbols that make up a sequence, and locations within them.

Uses of SoftMaskedAlphabet.MaskingDetector in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement SoftMaskedAlphabet.MaskingDetector

static class

SoftMaskedAlphabet.MaskingDetector.DefaultMaskingDetector

Fields in org.biojava.bio.symbol declared as SoftMaskedAlphabet.MaskingDetector

static SoftMaskedAlphabet.MaskingDetector

SoftMaskedAlphabet.MaskingDetector.DEFAULT

Methods in org.biojava.bio.symbol that return SoftMaskedAlphabet.MaskingDetector

SoftMaskedAlphabet.MaskingDetector

SoftMaskedAlphabet.getMaskingDetector() Getter for the MaskingDetector

Methods in org.biojava.bio.symbol with parameters of type SoftMaskedAlphabet.MaskingDetector

static SoftMaskedAlphabet

SoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask, SoftMaskedAlphabet.MaskingDetector maskingDetector) Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if any Symbol is soft masked or not.