Uses of Class
org.biojava.bio.symbol.UkkonenSuffixTree.SuffixNode

Packages that use UkkonenSuffixTree.SuffixNode

org.biojava.bio.symbol

Representation of the Symbols that make up a sequence, and locations within them.

Uses of UkkonenSuffixTree.SuffixNode in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return UkkonenSuffixTree.SuffixNode

UkkonenSuffixTree.SuffixNode	UkkonenSuffixTree.getRoot()
UkkonenSuffixTree.SuffixNode	UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to) Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.
UkkonenSuffixTree.SuffixNode	UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to) This method is used to walk down the tree, from a given node.

Methods in org.biojava.bio.symbol with parameters of type UkkonenSuffixTree.SuffixNode

protected ArrayList	UkkonenSuffixTree.getAllNodes(UkkonenSuffixTree.SuffixNode root, ArrayList list, boolean leavesOnly)
protected CharSequence	UkkonenSuffixTree.getEdgeLabel(UkkonenSuffixTree.SuffixNode child)
protected int	UkkonenSuffixTree.getEdgeLength(UkkonenSuffixTree.SuffixNode child) Tree navigation methods
protected CharSequence	UkkonenSuffixTree.getLabel(UkkonenSuffixTree.SuffixNode node)
protected int	UkkonenSuffixTree.getPathEnd(UkkonenSuffixTree.SuffixNode node)
protected int	UkkonenSuffixTree.getPathLength(UkkonenSuffixTree.SuffixNode node)
UkkonenSuffixTree.SuffixNode	UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to) Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.
UkkonenSuffixTree.SuffixNode	UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to) This method is used to walk down the tree, from a given node.