Package org.biojava.directory

Open Bio Sequence Database Access (OBDA) registry support.

See:
Description

Interface Summary

RegistryConfiguration	The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases.
SequenceDBProvider	Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Class Summary

OBDARegistryParser	This class encapsulates all the parsing of the OBDA registry configuration file.
Registry	Registry is a factory which gets implementations of the BioJava SequenceDBLite interface.
RegistryConfiguration.Composite	A RegistryConfiguration that allows you to treat other configurations as providing important or default configuration information.
RegistryConfiguration.Impl	A simple implementation of RegistryConfiguration backed by a Map.
SystemRegistry	A registry that loads up the standard biodirectory files.

Exception Summary

ProviderNotFoundException	ProviderNotFoundException is thrown when a sequence database provider can not be located.
RegistryException	A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.

Package org.biojava.directory Description

Open Bio Sequence Database Access (OBDA) registry support.