org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.ByNoteTermOnly

java.lang.Object
  org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
      org.biojavax.bio.db.biosql.BioSQLFeatureFilter.ByNoteTermOnly

All Implemented Interfaces:

Serializable, FeatureFilter, BioSQLFeatureFilter

Enclosing interface:

BioSQLFeatureFilter

public static final class BioSQLFeatureFilter.ByNoteTermOnly
extends BioSQLFeatureFilter.HibernateFeatureFilter

A filter that returns all features that have a note with the given term. The value and rank is not checked.

Since:

1.5

Author:

Richard Holland

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter

BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools

Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter

FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter

Field Summary

Fields inherited from class org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter

and, conjunctAdd, conjunction, disjunctAdd, disjunction, eq, ge, le, not, or

Fields inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter

all, none

Fields inherited from interface org.biojava.bio.seq.FeatureFilter

leaf, top_level

Constructor Summary

BioSQLFeatureFilter.ByNoteTermOnly(ComparableTerm term)

Method Summary

boolean	accept(Feature f) This method determines whether a feature is to be accepted.
Object	asCriterion() This method returns a Hibernate Criterion object that can be used to query the database.
Map	criterionAliasMap() Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all.
boolean	equals(Object o)
ComparableTerm	getTerm()
int	hashCode()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BioSQLFeatureFilter.ByNoteTermOnly

public BioSQLFeatureFilter.ByNoteTermOnly(ComparableTerm term)

Method Detail

getTerm

public ComparableTerm getTerm()

accept

public boolean accept(Feature f)

Description copied from interface: FeatureFilter

This method determines whether a feature is to be accepted.

Parameters:

f - the Feature to evaluate

Returns:

true if this feature is to be selected in, or false if it is to be ignored

asCriterion

public Object asCriterion()

Description copied from interface: BioSQLFeatureFilter

This method returns a Hibernate Criterion object that can be used to query the database.

Returns:

a Hibernate Criterion object representing this filter.

criterionAliasMap

public Map criterionAliasMap()

Description copied from interface: BioSQLFeatureFilter

Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all. If not, then it must at least return the empty map else you'll get NullPointerExceptions thrown elsewhere.

Specified by:

criterionAliasMap in interface BioSQLFeatureFilter

Overrides:

criterionAliasMap in class BioSQLFeatureFilter.HibernateFeatureFilter

Returns:

Map a map of property names to aliases used in the criterion.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object