org.biojavax.bio.seq.io
Class SimpleRichSequenceBuilderFactory

java.lang.Object
  org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory

All Implemented Interfaces:

SequenceBuilderFactory, RichSequenceBuilderFactory

public class SimpleRichSequenceBuilderFactory
extends Object
implements RichSequenceBuilderFactory

Generates RichSequenceBuilder objects.

Since:

1.5

Author:

Mark Schreiber, Richard Holland

See Also:

RichSequenceBuilder

Field Summary

Fields inherited from interface org.biojavax.bio.seq.io.RichSequenceBuilderFactory

FACTORY, PACKED, THRESHOLD, THRESHOLD_VALUE

Constructor Summary

SimpleRichSequenceBuilderFactory()
Creates a new instance of SimpleRichSequenceBuilderFactory

SimpleRichSequenceBuilderFactory(SymbolListFactory fact)
Creates a new instance of SimpleRichSequenceBuilderFactory

SimpleRichSequenceBuilderFactory(SymbolListFactory fact, int threshold)
Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length.

Method Summary

SequenceBuilder

makeSequenceBuilder()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory()

Creates a new instance of SimpleRichSequenceBuilderFactory

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory(SymbolListFactory fact)

Creates a new instance of SimpleRichSequenceBuilderFactory

Parameters:

fact - the factory to use when building the SymbolList.

SimpleRichSequenceBuilderFactory

public SimpleRichSequenceBuilderFactory(SymbolListFactory fact,
                                        int threshold)

Creates a new instance of SimpleRichSequenceBuilderFactory that uses a specified factory for SymbolLists longer than a specified length. Before that a SimpleSymbolListFacotry is used.

Parameters:

fact - the factory to use when building the SymbolList.

threshold - the threshold to exceed before using this factory

Method Detail

makeSequenceBuilder

public SequenceBuilder makeSequenceBuilder()

Specified by:

makeSequenceBuilder in interface SequenceBuilderFactory