Uses of Interface
org.biojavax.bio.seq.io.RichSeqIOListener

Packages that use RichSeqIOListener

org.biojavax.bio.seq.io

Classes to support the I/O of RichSequence and Bioentry objects.

Uses of RichSeqIOListener in org.biojavax.bio.seq.io

Subinterfaces of RichSeqIOListener in org.biojavax.bio.seq.io

interface

RichSequenceBuilder An interface for objects that can build RichSequences.

Classes in org.biojavax.bio.seq.io that implement RichSeqIOListener

class	DebuggingRichSeqIOListener This is purely for debugging purposes.
class	RichSeqIOAdapter This class implements all methods of RichSeqIOListener and takes no action.
class	SimpleRichSequenceBuilder Constructs BioEntry objects by listening to events.

Methods in org.biojavax.bio.seq.io with parameters of type RichSeqIOListener

boolean	EMBLFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
boolean	GenbankFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
boolean	INSDseqFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
boolean	UniProtFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
boolean	EMBLxmlFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
boolean	UniProtXMLFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols. If namespace is null, then the namespace of the sequence in the fasta is used.
boolean	RichSequenceFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener listener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.
boolean	FastaFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rsiol, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols. If namespace is null, then the namespace of the sequence in the fasta is used.