ssbind
Class Echoer

java.lang.Object
  ssbind.Echoer

All Implemented Interfaces:

org.biojava.bio.search.SearchContentHandler

public class Echoer
extends Object
implements org.biojava.bio.search.SearchContentHandler

Echo the event stream to stdout with prety indenting.

This class is most useful to check that your parsing is working. You can use an Echoer as the last handler in a chain of filters, or attach it directly to the parser. It is an instructive way to work out what events are being fired when, and with what properties attached.

Author:

Matthew Pocock

Constructor Summary

Echoer()

Method Summary

void	addHitProperty(Object key, Object value)
void	addSearchProperty(Object key, Object value)
void	addSubHitProperty(Object key, Object value)
void	endHeader()
void	endHit()
void	endSearch()
void	endSubHit()
boolean	getMoreSearches()
String	getPrefix()
void	indent()
void	outdent()
void	setDatabaseID(String databaseID)
void	setMoreSearches(boolean val)
void	setQueryID(String queryID)
void	setQuerySeq(String seqID)
void	setSubjectDB(String dbID)
void	startHeader()
void	startHit()
void	startSearch()
void	startSubHit()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Echoer

public Echoer()

Method Detail

indent

public void indent()

outdent

public void outdent()

getPrefix

public String getPrefix()

addHitProperty

public void addHitProperty(Object key,
                           Object value)

Specified by:

addHitProperty in interface org.biojava.bio.search.SearchContentHandler

addSearchProperty

public void addSearchProperty(Object key,
                              Object value)

Specified by:

addSearchProperty in interface org.biojava.bio.search.SearchContentHandler

addSubHitProperty

public void addSubHitProperty(Object key,
                              Object value)

Specified by:

addSubHitProperty in interface org.biojava.bio.search.SearchContentHandler

startHeader

public void startHeader()

Specified by:

startHeader in interface org.biojava.bio.search.SearchContentHandler

endHeader

public void endHeader()

Specified by:

endHeader in interface org.biojava.bio.search.SearchContentHandler

startHit

public void startHit()

Specified by:

startHit in interface org.biojava.bio.search.SearchContentHandler

endHit

public void endHit()

Specified by:

endHit in interface org.biojava.bio.search.SearchContentHandler

startSearch

public void startSearch()

Specified by:

startSearch in interface org.biojava.bio.search.SearchContentHandler

endSearch

public void endSearch()

Specified by:

endSearch in interface org.biojava.bio.search.SearchContentHandler

startSubHit

public void startSubHit()

Specified by:

startSubHit in interface org.biojava.bio.search.SearchContentHandler

endSubHit

public void endSubHit()

Specified by:

endSubHit in interface org.biojava.bio.search.SearchContentHandler

getMoreSearches

public boolean getMoreSearches()

Specified by:

getMoreSearches in interface org.biojava.bio.search.SearchContentHandler

setMoreSearches

public void setMoreSearches(boolean val)

Specified by:

setMoreSearches in interface org.biojava.bio.search.SearchContentHandler

setQuerySeq

public void setQuerySeq(String seqID)

setSubjectDB

public void setSubjectDB(String dbID)

setQueryID

public void setQueryID(String queryID)

Specified by:

setQueryID in interface org.biojava.bio.search.SearchContentHandler

setDatabaseID

public void setDatabaseID(String databaseID)

Specified by:

setDatabaseID in interface org.biojava.bio.search.SearchContentHandler