|
Class Summary |
| AlignmentBuilder |
This filter intercepts the querySequence and subjectSequence events to build
an alignment. |
| CountHits |
Prints out a count of the total number of hits in a report. |
| CountSubHits |
Prints out a count of the total number of sub hits in a report. |
| Echoer |
Echo the event stream to stdout with prety indenting. |
| FilterByValue |
Filter complete sub hits by the numerical value of some property. |
| ListQueries |
Lists all query sequence names in the report. |
| ListSubjects |
Lists all subject sequence names in the report. |
| ProcessBlastReport |
Driver script that parses a blast report and pumps the result through a
configurable chain of filters and handlers. |
| PropertyEchoer |
Print out the value of a single property. |
| SubHitBuilder |
Build SeqSimilaritySearchSubHit instances from the sub hit info. |
| SubHitFilter |
Abstract base class for things that will allow or disallow whole sub hit
messages through to the next handler. |