
                               EMBOSS: dichet
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                                Program dichet
                                       
Function

   Parse dictionary of heterogen groups
   
Description

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Usage

   Here is a sample session with dichet:

% dichet

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Command line arguments

   Mandatory qualifiers (* if not always prompted):
  [-inf]               infile     Name of raw input file (dictionary of
                                  heterogen groups)
  [-dogrep]            bool       Search a directory of files with keywords?
  [-outf]              outfile    Name of output file
*  -path               string     Directory to search with keywords
*  -extn               string     Exension of files to search in above
                                  directory

   Optional qualifiers: (none)
   Advanced qualifiers: (none)
   General qualifiers:
  -help                bool       report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   

   Mandatory qualifiers Allowed values Default
   [-inf]
   (Parameter 1) Name of raw input file (dictionary of heterogen groups)
   Input file Required
   [-dogrep]
   (Parameter 2) Search a directory of files with keywords? Yes/No No
   [-outf]
   (Parameter 3) Name of output file Output file <sequence>.dichet
   -path Directory to search with keywords Any string is accepted ./
   -extn Exension of files to search in above directory Any string is
   accepted .ent
   Optional qualifiers Allowed values Default
   (none)
   Advanced qualifiers Allowed values Default
   (none)
   
Input file format

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Output file format

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Data files

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Notes

   None.
   
References

   None.
   
Warnings

   None.
   
Diagnostic Error Messages

   None.
   
Exit status

   It always exits with status 0.
   
Known bugs

   None.
   
See also

   Program name Description
   contacts Reads coordinate files and writes contact files
   interface Reads coordinate files and writes inter-chain contact files
   psiblasts Runs PSI-BLAST given scopalign alignments
   scopalign Generate alignments for SCOP families
   seqsort Removes ambiguities from a set of hits resulting from a
   database search
   siggen Generates a sparse protein signature
   sigscan Scans a sparse protein signature against swissprot
   
Author(s)

   This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)
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History

   Written (date) - author. **************** EDIT HERE ****************
   
Target users

   This program is intended to be used by everyone and everything, from
   naive users to embedded scripts.
   
Comments
