Member List

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# gnFileSource Member List

This is the complete list of members for gnFileSource, including all inherited members.

Clone() const=0 | gnFileSource | `[pure virtual]`
Close() | gnFileSource | `[virtual]`
DetermineNewlineType() | gnFileSource | `[protected]`
GetContigID(const string &name) const=0 | gnBaseSource | `[pure virtual]`
GetContigListLength() const=0 | gnBaseSource | `[pure virtual]`
GetContigName(const uint32 i) const=0 | gnBaseSource | `[pure virtual]`
GetContigSeqLength(const uint32 i) const=0 | gnBaseSource | `[pure virtual]`
GetFileContig(const uint32 contigI) const=0 | gnFileSource | `[pure virtual]`
GetFilter() const | gnFileSource | `[inline, virtual]`
GetOpenString() const | gnFileSource | `[inline, virtual]`
GetSpec() const=0 | gnBaseSource | `[pure virtual]`
gnBaseSource() | gnBaseSource | `[inline]`
gnClone() | gnClone | `[inline]`
gnFileSource() | gnFileSource | `[inline]`
gnFileSource(const gnFileSource &gnfs) | gnFileSource |
HasContig(const string &name) const=0 | gnBaseSource | `[pure virtual]`
m_ifstream | gnFileSource | `[protected]`
m_newlineSize | gnFileSource | `[protected]`
m_newlineType | gnFileSource | `[protected]`
m_openString | gnFileSource | `[protected]`
m_pFilter | gnFileSource | `[protected]`
Open(string openString) | gnFileSource | `[virtual]`
Open() | gnFileSource | `[virtual]`
ParseStream(istream &fin)=0 | gnFileSource | `[private, pure virtual]`
Read(const uint64 pos, char *buf, uint32 &bufLen) | gnFileSource | `[virtual]`
SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)=0 | gnBaseSource | `[pure virtual]`
SetFilter(gnFilter *filter) | gnFileSource | `[inline, virtual]`
~gnBaseSource() | gnBaseSource | `[inline, virtual]`
~gnClone() | gnClone | `[inline, virtual]`
~gnFileSource() | gnFileSource | `[inline, virtual]`