Member List

Main Page Namespace List Class Hierarchy Alphabetical List Compound List File List Compound Members File Members

# gnLocation Member List

This is the complete list of members for gnLocation, including all inherited members.

allRegions enum value | gnLocation |
Clear() | gnLocation |
Clone() const | gnLocation | `[virtual]`
Contains(const gnLocation &l, const intersectRestriction cr=allRegions) const | gnLocation |
CropEnd(const gnSeqI end) | gnLocation |
CropStart(const gnSeqI start) | gnLocation |
CropTo(const gnLocation &l) | gnLocation |
Defined | gnLocation | `[static]`
determinedRegions enum value | gnLocation |
GetBounds(gnSeqI &s, gnSeqI &sl, gnSeqI &e, gnSeqI &el) const | gnLocation |
GetEnd() const | gnLocation | `[inline]`
GetEndLength() const | gnLocation | `[inline]`
GetFirst() const | gnLocation | `[inline]`
GetIntersection(const gnLocation &l, const intersectRestriction ir) const | gnLocation |
GetLast() const | gnLocation | `[inline]`
GetStart() const | gnLocation | `[inline]`
GetStartLength() const | gnLocation | `[inline]`
GetType() const | gnLocation | `[inline]`
GetUnion(const gnLocation &l) const | gnLocation |
gnClone() | gnClone | `[inline]`
gnLocation() | gnLocation |
gnLocation(const gnLocation &s) | gnLocation |
gnLocation(const gnSeqI start, const gnSeqI end, const gnLocationType type=LT_Standard, string contigName="") | gnLocation |
gnLocation(const gnSeqI start, const gnSeqI startLength, const gnSeqI end, gnSeqI endLength, const gnLocationType type=LT_Standard, string contigName="") | gnLocation |
gnLocationType enum name | gnLocation |
intersectRestriction enum name | gnLocation |
Intersects(const gnLocation &l, const intersectRestriction ir=allRegions) const | gnLocation |
IsEndBoundLonger() const | gnLocation | `[inline]`
IsEndBoundShorter() const | gnLocation | `[inline]`
IsStartBoundLonger() const | gnLocation | `[inline]`
IsStartBoundShorter() const | gnLocation | `[inline]`
LT_BetweenBases enum value | gnLocation |
LT_Complement enum value | gnLocation |
LT_Group enum value | gnLocation |
LT_Nothing enum value | gnLocation |
LT_OneOf enum value | gnLocation |
LT_Order enum value | gnLocation |
LT_Standard enum value | gnLocation |
m_end | gnLocation | `[private]`
m_endLength | gnLocation | `[private]`
m_name | gnLocation | `[private]`
m_start | gnLocation | `[private]`
m_startLength | gnLocation | `[private]`
m_type | gnLocation | `[private]`
MoveNegative(const gnSeqI diff) | gnLocation |
MovePositive(const gnSeqI diff) | gnLocation |
MoveTo(const int direction, const gnSeqI diff) | gnLocation |
SetBounds(const gnSeqI start, const gnSeqI startLength, const gnSeqI end, const gnSeqI endLength) | gnLocation |
SetBounds(const gnSeqI start, const gnSeqI end) | gnLocation |
SetEnd(const gnSeqI end) | gnLocation | `[inline]`
SetEnd(const gnSeqI end, const gnSeqI endLength) | gnLocation | `[inline]`
SetEndLength(const gnSeqI endLength) | gnLocation | `[inline]`
SetStart(const gnSeqI start) | gnLocation | `[inline]`
SetStart(const gnSeqI start, const gnSeqI startLength) | gnLocation | `[inline]`
SetStartLength(const gnSeqI startLength) | gnLocation | `[inline]`
SetType(const gnLocationType lt) | gnLocation | `[inline]`
undeterminedRegions enum value | gnLocation |
Unknown | gnLocation | `[static]`
~gnClone() | gnClone | `[inline, virtual]`