Member List

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# gnSourceSpec Member List

This is the complete list of members for gnSourceSpec, including all inherited members.

Clear() | gnSourceSpec | `[virtual]`
Clone() const | gnSourceSpec | `[inline, virtual]`
CloneRange(const gnSeqI startI, const gnSeqI len) const | gnSourceSpec | `[virtual]`
gnContigSpec::CloneRange(const uint32 startI, const uint32 len) const=0 | gnContigSpec | `[pure virtual]`
CropEnd(gnSeqI cropLen) | gnContigSpec | `[virtual]`
CropStart(gnSeqI cropLen) | gnContigSpec | `[virtual]`
GetLength() const | gnContigSpec | `[inline, virtual]`
GetName() const | gnBaseSpec | `[inline, virtual]`
GetSource() const | gnSourceSpec | `[inline, virtual]`
GetSourceContigIndex() const | gnContigSpec | `[inline, virtual]`
GetSourceLength() const | gnSourceSpec | `[inline, virtual]`
GetSourceName() const | gnContigSpec | `[inline, virtual]`
GetStart() const | gnContigSpec | `[inline, virtual]`
gnBaseSpec() | gnBaseSpec | `[inline]`
gnClone() | gnClone | `[inline]`
gnContigSpec() | gnContigSpec | `[inline]`
gnSourceSpec() | gnSourceSpec |
gnSourceSpec(gnBaseSource *m_pSource, const uint32 m_ContigIndex=ALL_CONTIGS, const gnSeqI startI=0, const gnSeqI endI=GNSEQI_END, const boolean revComp=false) | gnSourceSpec |
gnSourceSpec(const gnSourceSpec &s) | gnSourceSpec |
IsCircular() const | gnBaseSpec | `[inline, virtual]`
IsReverseComplement() const | gnBaseSpec | `[inline, virtual]`
m_circular | gnBaseSpec | `[protected]`
m_length | gnContigSpec | `[protected]`
m_name | gnBaseSpec | `[protected]`
m_pSource | gnSourceSpec | `[protected]`
m_reverseComplement | gnBaseSpec | `[protected]`
m_SourceContigIndex | gnContigSpec | `[protected]`
m_sourceName | gnBaseSpec | `[protected]`
m_start | gnContigSpec | `[protected]`
Read(const gnSeqI start, gnSeqC *buf, uint32 &bufLen) const | gnSourceSpec | `[inline, protected, virtual]`
SeqRead(const gnSeqI start, gnSeqC *buf, uint32 &bufLen, const uint32 contigI) const | gnContigSpec | `[virtual]`
SetCircular(const boolean value) | gnBaseSpec | `[inline, virtual]`
SetLength(const gnSeqI len) | gnContigSpec | `[inline, virtual]`
SetName(const string &name) | gnBaseSpec | `[inline, virtual]`
SetReverseComplement(const boolean value) | gnContigSpec | `[virtual]`
SetSourceContigIndex(const uint32 contigI) | gnContigSpec | `[inline, virtual]`
SetSourceName(const string &sourceName) | gnContigSpec | `[inline, virtual]`
SetStart(const gnSeqI start) | gnContigSpec | `[inline, virtual]`
~gnBaseSpec() | gnBaseSpec | `[inline, virtual]`
~gnClone() | gnClone | `[inline, virtual]`
~gnContigSpec() | gnContigSpec | `[inline, virtual]`
~gnSourceSpec() | gnSourceSpec |