gnStringTools.h Source File

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# gnStringTools.h

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    00001 /////////////////////////////////////////////////////////////////////////////
    00002 // File:            gnStringTools.h
    00003 // Purpose:         Random string manipulation tools
    00004 // Description:     Random string manipulation tools
    00005 // Changes:
    00006 // Version:         libGenome 0.5.1
    00007 // Author:          Aaron Darling
    00008 // Modified by:
    00009 // Copyright:       (c) Aaron Darling
    00010 // Licenses:        See COPYING file for details
    00011 /////////////////////////////////////////////////////////////////////////////
    00012
    00013 #ifndef _gnStringTools_h_
    00014 #define _gnStringTools_h_
    00015
    00016 #include <iostream>
    00017 #include <string>
    00018 #include <vector>
    00019 #include <stdlib.h>
    00020 #include <stdio.h>
    00021 #include "gn/gnDefs.h"
    00022
    00023 unsigned int removeSpace(string &str);
    00024 void removeEndSpace(string &str);
    00025
    00026 bool isNewLine(char ch);
    00027 bool isWhiteSpace(char ch);
    00028 bool isSpace(char ch);
    00029
    00030 string uintToString(unsigned int value);
    00031
    00032 string ulongToString(unsigned long value);
    00033
    00034 string charArrayToString( char *charArray, unsigned int length);
    00035
    00036 bool isBase(char base);
    00037 void BaseCount(const string& bases, gnSeqI& a_count, gnSeqI& c_count, gnSeqI& g_count, gnSeqI& t_count, gnSeqI& other_count);
    00038
    00039 unsigned int parseValue(string &valueString);
    00040 int parseUintValue(string &valueString);
    00041 int parseIntValue(string &valueString);
    00042
    00043 vector< string > tokenizeString( const string &str, char delimiter  = '\t' );
    00044 vector< string > tokenizeString( const char* str, unsigned int len, char delimiter = '\t' );
    00045
    00046 // **** MAKE SURE YOU STANDARIZE ALL PATHS ****
    00047 void standarizePathString( string &oFileName );
    00048
    00049 // **** ONLY '/' IS USED for file seperation on all below functions ****
    00050
    00051 // make more robust to handle dir and files
    00052 string getPathString( string oFileName );
    00053 // look for '/' at end
    00054 string getFileString( string oFileName );
    00055 // look for '/' before '.'
    00056 string getExtString( string oFileName );
    00057 // look for '/' before '.'
    00058 string getFileNoExtString( string oFileName );
    00059
    00060 #endif  // _gnStringTools_h_