Member List

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# gnFileContig Member List

This is the complete list of members for gnFileContig, including all inherited members.

AddToSeqLength(const gnSeqI len) | gnFileContig | `[inline]`
Clear() | gnFileContig |
Clone() const | gnFileContig | `[inline, virtual]`
GetFileLength() const | gnFileContig | `[inline]`
GetFileStartEnd() const | gnFileContig | `[inline]`
GetName() const | gnFileContig | `[inline]`
GetRepeatSeqGapSize() const | gnFileContig | `[inline]`
GetSectLength(gnContigSection i) const | gnFileContig | `[inline]`
GetSectStartEnd(const gnContigSection i) const | gnFileContig | `[inline]`
GetSeqLength() const | gnFileContig | `[inline]`
gnClone() | gnClone | `[inline]`
gnFileContig() | gnFileContig |
gnFileContig(string nameStr, const uint64 pos, const uint64 len) | gnFileContig |
gnFileContig(const gnFileContig &fc) | gnFileContig |
HasRepeatSeqGap() const | gnFileContig | `[inline]`
m_fileStartEnd | gnFileContig | `[private]`
m_name | gnFileContig | `[private]`
m_repeatSeqGap | gnFileContig | `[private]`
m_repeatSeqGapSize | gnFileContig | `[private]`
m_seqLength | gnFileContig | `[private]`
m_startEndArray | gnFileContig | `[private]`
SetFileEnd(const uint64 e) | gnFileContig | `[inline]`
SetFileStart(const uint64 s) | gnFileContig | `[inline]`
SetFileStartEnd(const pair< uint64, uint64 > se) | gnFileContig | `[inline]`
SetName(string nameStr) | gnFileContig | `[inline]`
SetRepeatGapSize(const uint64 gapSize) | gnFileContig |
SetRepeatSeqGap(const boolean rsg) | gnFileContig | `[inline]`
SetRepeatSeqGapSize(const pair< uint64, uint64 > rsgSize) | gnFileContig | `[inline]`
SetRepeatSeqSize(const uint64 seqSize) | gnFileContig |
SetSectEnd(const gnContigSection i, const uint64 e) | gnFileContig | `[inline]`
SetSectStart(const gnContigSection i, const uint64 s) | gnFileContig | `[inline]`
SetSectStartEnd(const gnContigSection i, const pair< uint64, uint64 > se) | gnFileContig | `[inline]`
SetSeqLength(const gnSeqI len) | gnFileContig | `[inline]`
~gnClone() | gnClone | `[inline, virtual]`
~gnFileContig() | gnFileContig |