Member List

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# gnABISource Member List

This is the complete list of members for gnABISource, including all inherited members.

Clone() const | gnABISource | `[inline, virtual]`
Close() | gnFileSource | `[virtual]`
DetermineNewlineType() | gnFileSource | `[protected]`
GetContig(const uint32 i) const | gnABISource |
GetContigID(const string &name) const | gnABISource | `[virtual]`
GetContigListLength() const | gnABISource | `[inline, virtual]`
GetContigName(uint32 i) const | gnABISource | `[virtual]`
GetContigSeqLength(uint32 i) const | gnABISource | `[virtual]`
GetFileContig(const uint32 contigI) const | gnABISource | `[virtual]`
GetFilter() const | gnFileSource | `[inline, virtual]`
GetOpenString() const | gnFileSource | `[inline, virtual]`
GetSpec() const | gnABISource | `[inline, virtual]`
gnABISource() | gnABISource |
gnABISource(const gnABISource &s) | gnABISource |
gnBaseSource() | gnBaseSource | `[inline]`
gnClone() | gnClone | `[inline]`
gnFileSource() | gnFileSource | `[inline]`
gnFileSource(const gnFileSource &gnfs) | gnFileSource |
HasContig(const string &name) const | gnABISource | `[virtual]`
m_contigList | gnABISource | `[private]`
m_ifstream | gnFileSource | `[protected]`
m_newlineSize | gnFileSource | `[protected]`
m_newlineType | gnFileSource | `[protected]`
m_openString | gnFileSource | `[protected]`
m_pFilter | gnFileSource | `[protected]`
m_spec | gnABISource | `[private]`
Open(string openString) | gnFileSource | `[virtual]`
Open() | gnFileSource | `[virtual]`
ParseStream(istream &fin) | gnABISource | `[private, virtual]`
Read(const uint64 pos, char *buf, uint32 &bufLen) | gnFileSource | `[virtual]`
SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS) | gnABISource | `[virtual]`
SeqSeek(const gnSeqI start, const uint32 &contigI, uint64 &startPos, uint64 &readableBytes) | gnABISource | `[private]`
SeqStartPos(const gnSeqI start, gnFileContig &contig, uint64 &startPos, uint64 &readableBytes) | gnABISource | `[private]`
SetFilter(gnFilter *filter) | gnFileSource | `[inline, virtual]`
Write(gnSequence &sequence, const string &filename) | gnABISource | `[static]`
~gnABISource() | gnABISource |
~gnBaseSource() | gnBaseSource | `[inline, virtual]`
~gnClone() | gnClone | `[inline, virtual]`
~gnFileSource() | gnFileSource | `[inline, virtual]`