| change_coordinates() | sc::MolecularCoor | [virtual] |
| class_desc() const | sc::DescribedClass | |
| class_name() const | sc::DescribedClass | |
| class_version() const | sc::DescribedClass | |
| debug_ (defined in sc::MolecularCoor) | sc::MolecularCoor | [protected] |
| dereference() | sc::RefCount | [inline] |
| DescribedClass() (defined in sc::DescribedClass) | sc::DescribedClass | |
| DescribedClass(const DescribedClass &) (defined in sc::DescribedClass) | sc::DescribedClass | |
| dim()=0 | sc::MolecularCoor | [pure virtual] |
| dim_natom3() | sc::MolecularCoor | [inline] |
| dir_restore_state(StateIn &si, const char *objectname, const char *keyword=0) (defined in sc::SavableState) | sc::SavableState | [static] |
| dnatom3_ (defined in sc::MolecularCoor) | sc::MolecularCoor | [protected] |
| guess_hessian(RefSymmSCMatrix &hessian)=0 | sc::MolecularCoor | [pure virtual] |
| identifier() | sc::Identity | [inline] |
| inverse_hessian(RefSymmSCMatrix &)=0 | sc::MolecularCoor | [pure virtual] |
| key_restore_state(StateIn &si, const char *keyword) | sc::SavableState | [static] |
| lock_ptr() const | sc::RefCount | |
| managed() const (defined in sc::RefCount) | sc::RefCount | [inline] |
| managed() const | sc::RefCount | [inline] |
| matrixkit() const (defined in sc::MolecularCoor) | sc::MolecularCoor | [inline] |
| matrixkit_ (defined in sc::MolecularCoor) | sc::MolecularCoor | [protected] |
| MolecularCoor(Ref< Molecule > &) (defined in sc::MolecularCoor) | sc::MolecularCoor | |
| MolecularCoor(StateIn &) (defined in sc::MolecularCoor) | sc::MolecularCoor | |
| MolecularCoor(const Ref< KeyVal > &) | sc::MolecularCoor | |
| molecule() const | sc::MolecularCoor | [inline] |
| molecule_ (defined in sc::MolecularCoor) | sc::MolecularCoor | [protected] |
| nconstrained() | sc::MolecularCoor | [virtual] |
| nreference() const | sc::RefCount | [inline] |
| operator=(const SavableState &) (defined in sc::SavableState) | sc::SavableState | |
| operator=(const DescribedClass &) (defined in sc::DescribedClass) | sc::DescribedClass | |
| operator=(const RefCount &) (defined in sc::RefCount) | sc::RefCount | [inline, protected] |
| print(std::ostream &=ExEnv::out0()) const=0 | sc::MolecularCoor | [pure virtual] |
| print_simples(std::ostream &=ExEnv::out0()) const=0 (defined in sc::MolecularCoor) | sc::MolecularCoor | [pure virtual] |
| RefCount() (defined in sc::RefCount) | sc::RefCount | [inline, protected] |
| RefCount(const RefCount &) (defined in sc::RefCount) | sc::RefCount | [inline, protected] |
| reference() | sc::RefCount | [inline] |
| restore_state(StateIn &si) | sc::SavableState | [static] |
| SavableState() (defined in sc::SavableState) | sc::SavableState | [protected] |
| SavableState(const SavableState &) (defined in sc::SavableState) | sc::SavableState | [protected] |
| SavableState(StateIn &) | sc::SavableState | [protected] |
| save_data_state(StateOut &) | sc::MolecularCoor | [virtual] |
| save_object_state(StateOut &) | sc::SavableState | |
| save_state(StateOut &) | sc::SavableState | |
| save_state(SavableState *s, StateOut &) (defined in sc::SavableState) | sc::SavableState | [static] |
| save_vbase_state(StateOut &) | sc::SavableState | [virtual] |
| to_cartesian(const RefSCVector &internal) | sc::MolecularCoor | |
| to_cartesian(const Ref< Molecule > &mol, const RefSCVector &internal)=0 (defined in sc::MolecularCoor) | sc::MolecularCoor | [pure virtual] |
| to_cartesian(RefSCVector &cartesian, RefSCVector &internal)=0 | sc::MolecularCoor | [pure virtual] |
| to_cartesian(RefSymmSCMatrix &cartesian, RefSymmSCMatrix &internal)=0 | sc::MolecularCoor | [pure virtual] |
| to_internal(RefSCVector &internal)=0 | sc::MolecularCoor | [pure virtual] |
| to_internal(RefSCVector &internal, RefSCVector &cartesian)=0 | sc::MolecularCoor | [pure virtual] |
| to_internal(RefSymmSCMatrix &internal, RefSymmSCMatrix &cartesian)=0 | sc::MolecularCoor | [pure virtual] |
| unlock_ptr() const | sc::RefCount | |
| unmanage() | sc::RefCount | [inline] |
| use_locks(bool inVal) | sc::RefCount | |
| ~DescribedClass() (defined in sc::DescribedClass) | sc::DescribedClass | [virtual] |
| ~Identity() (defined in sc::Identity) | sc::Identity | [virtual] |
| ~MolecularCoor() (defined in sc::MolecularCoor) | sc::MolecularCoor | [virtual] |
| ~RefCount() (defined in sc::RefCount) | sc::RefCount | [virtual] |
| ~SavableState() (defined in sc::SavableState) | sc::SavableState | [virtual] |