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EMBOSS: dichet |
% dichet**************** EDIT HERE ****************
Mandatory qualifiers (* if not always prompted):
[-inf] infile Name of raw input file (dictionary of
heterogen groups)
[-dogrep] bool Search a directory of files with keywords?
[-outf] outfile Name of output file
* -path string Directory to search with keywords
* -extn string Exension of files to search in above
directory
Optional qualifiers: (none)
Advanced qualifiers: (none)
General qualifiers:
-help bool report command line options. More
information on associated and general
qualifiers can be found with -help -verbose
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| Mandatory qualifiers | Allowed values | Default | |
|---|---|---|---|
| [-inf] (Parameter 1) |
Name of raw input file (dictionary of heterogen groups) | Input file | Required |
| [-dogrep] (Parameter 2) |
Search a directory of files with keywords? | Yes/No | No |
| [-outf] (Parameter 3) |
Name of output file | Output file | <sequence>.dichet |
| -path | Directory to search with keywords | Any string is accepted | ./ |
| -extn | Exension of files to search in above directory | Any string is accepted | .ent |
| Optional qualifiers | Allowed values | Default | |
| (none) | |||
| Advanced qualifiers | Allowed values | Default | |
| (none) | |||
| Program name | Description |
|---|---|
| contacts | Reads coordinate files and writes contact files |
| interface | Reads coordinate files and writes inter-chain contact files |
| psiblasts | Runs PSI-BLAST given scopalign alignments |
| scopalign | Generate alignments for SCOP families |
| seqsort | Removes ambiguities from a set of hits resulting from a database search |
| siggen | Generates a sparse protein signature |
| sigscan | Scans a sparse protein signature against swissprot |