EMBOSS

EMBOSS: PROTEIN 3D STRUCTURE

Program name Description

contacts Reads coordinate files and writes contact files

dichet Parse dictionary of heterogen groups

interface Reads coordinate files and writes inter-chain contact files

psiblasts Runs PSI-BLAST given scopalign alignments

scopalign Generate alignments for SCOP families

seqsort Removes ambiguities from a set of hits resulting from a database search

siggen Generates a sparse protein signature

sigscan Scans a sparse protein signature against swissprot

Program name	Description
contacts	Reads coordinate files and writes contact files
dichet	Parse dictionary of heterogen groups
interface	Reads coordinate files and writes inter-chain contact files
psiblasts	Runs PSI-BLAST given scopalign alignments
scopalign	Generate alignments for SCOP families
seqsort	Removes ambiguities from a set of hits resulting from a database search
siggen	Generates a sparse protein signature
sigscan	Scans a sparse protein signature against swissprot