appl: marscan [
  documentation: "Finds MAR/SAR sites in nucleic sequences"
  groups: "Nucleic:Gene finding, Nucleic:Motifs"
]

section: input [ info: "input Section" type: page ]
seqall: sequence  [
  parameter: "Y"
  type: "dna"
]

endsection: input

section: output [ info: "output Section" type: page ]
report: outfile  [
  parameter: "Y"
  taglist: "str:type int:start8bp int:end8bp int:start16bp int:end16bp"
  rformat: "gff"
  information: "Output feature report"
  help: "File for output of MAR/SAR recognition signature (MRS) regions. This contains details of the MRS in normal GFF format. The MRS consists of two recognition sites, one of 8 bp and one of 16 bp on either sense strand of the genomic DNA, within 200 bp of each other."
]

endsection: output

