# Genetic Code Table
#
# Obtained from: http://www.ncbi.nlm.nih.gov/collab/FT/genetic_codes.html
# and: http://www3.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wprintgc?mode=c
#
# Differences from the Standard Code: 
# 
# None 
# 
# Alternative Initiation Codons: 
# 
# GUG, UUG, AUU, CUG 
# 
# Systematic Range: 
# 
# Prokaryotes including the eubacteria (Kozak, 1983) and archaebacteria
# (Brown et al.  1989; Noelling et al., unpublished). 
# 
# Comments: 
# 
# UGA codes at low efficiency for Trp in Bacillus subtilis and,
# presumably, in Escherichia coli (Hatfiled and Diamond, 1993). 
# 
# CUG is known to function as an initiator for one plasmid-encoded protein
# (RepA) in Escherichia coli (Spiers and Bergquist, 1992) and possibly in
# Methanobacterium thermoautotrophicum (Noelling et al., unpublished)
# 
# There is no record of AUU initition codon for the archaebacteria. 


Genetic Code [11]

Bacterial
 
AAs  =   FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG


