appl: octanol [
  documentation: "Displays protein hydropathy"
  groups: "Protein:Composition"
]

section: input [ info: "input Section" type: page ]
sequence: sequencea  [
  parameter: "Y"
  type: "pureprotein"
]

endsection: input

section: advanced [ info: "advanced Section" type: page ]
datafile: datafile  [
  optional: "Y"
  information: "White-Wimley data file (Ewhite-wimley.dat)"
  default: "Ewhite-wimley.dat"
]

integer: width  [
  optional: "Y"
  information: "window size"
  default: "19"
  minimum: "1"
  maximum: "200"
]

endsection: advanced

section: output [ info: "output Section" type: page ]
xygraph: graph  [
  parameter: "Y"
  multiple: "3"
  gxtitle: "$(sequencea.name)"
  gytitle: "Total Free Energy (Kcal/mol)"
  gtitle: "White-Wimley Plot"
]

bool: octanolplot  [
  optional: "Y"
  default: "N"
  information: "Display the octanol plot"
]

bool: interfaceplot  [
  optional: "Y"
  default: "N"
  information: "Display the interface plot"
]

bool: differenceplot  [
  optional: "Y"
  default: "Y"
  information: "Display the difference plot"
]

endsection: output
