EMBOSS: dichet

| ## EMBOSS: dichet

# Program dichet

## Function

Parse dictionary of heterogen groups

## Description

**************** EDIT HERE ****************

## Usage

Here is a sample session with dichet:

    % dichet

**************** EDIT HERE ****************

## Command line arguments

       Mandatory qualifiers (* if not always prompted):
      [-inf]               infile     Name of raw input file (dictionary of
                                      heterogen groups)
      [-dogrep]            bool       Search a directory of files with keywords?
      [-outf]              outfile    Name of output file
    *  -path               string     Directory to search with keywords
    *  -extn               string     Exension of files to search in above
                                      directory

       Optional qualifiers: (none)
       Advanced qualifiers: (none)
       General qualifiers:
      -help                bool       report command line options. More
                                      information on associated and general
                                      qualifiers can be found with -help -verbose

Mandatory qualifiers | Allowed values | Default
--- | --- | ---
[-inf] (Parameter 1) | Name of raw input file (dictionary of heterogen groups) | Input file | Required
[-dogrep] (Parameter 2) | Search a directory of files with keywords? | Yes/No | No
[-outf] (Parameter 3) | Name of output file | Output file | <sequence>.dichet
-path | Directory to search with keywords | Any string is accepted | ./
-extn | Exension of files to search in above directory | Any string is accepted | .ent
Optional qualifiers | Allowed values | Default
(none)
Advanced qualifiers | Allowed values | Default
(none)

## Input file format

**************** EDIT HERE ****************

## Output file format

**************** EDIT HERE ****************

## Data files

**************** EDIT HERE ****************

## Notes

None.

## References

None.

## Warnings

None.

## Diagnostic Error Messages

None.

## Exit status

It always exits with status 0.

## Known bugs

None.

## See also

Program name | Description
--- | ---
contacts | Reads coordinate files and writes contact files
interface | Reads coordinate files and writes inter-chain contact files
psiblasts | Runs PSI-BLAST given scopalign alignments
scopalign | Generate alignments for SCOP families
seqsort | Removes ambiguities from a set of hits resulting from a database search
siggen | Generates a sparse protein signature
sigscan | Scans a sparse protein signature against swissprot

## Author(s)

This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk) **************** EDIT HERE ****************

## History

Written (date) - author. **************** EDIT HERE ****************

## Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

## Comments