Annotated Index

Main Page Namespace List Class Hierarchy Alphabetical List Compound List File List Compound Members File Members

# libGenome Compound List

Here are the classes, structs, unions and interfaces with brief descriptions:

- ExMem
- gnABISource (GnABISource is not implemented)
- gnBaseFeature (Features of DNA sequences can be accessed and manipulated using classes derived from gnBaseFeature)
- gnBaseFilter
- gnBaseHeader (This class provides a general interface to sequence related headers)
- gnBaseQualifier (GnBaseQualifier is a general interface to sequence qualifiers)
- gnBaseSource (GnBaseSource defines a standard interface for derived classes to provide access to file, database, and network sources of genetic data)
- gnBaseSpec (GnBaseSpec is the class which stores genetic information and is best accessed using gnSequence)
- gnClone
- gnCompare
- gnContigSpec (GnContigSpec is an interface for classes which store contigs, or reads, of DNA or protein sequence)
- gnDataBaseSource (Not yet implemented)
- gnDNASequence (GnDNASequence is a special kind of gnSequence which can be used for DNA sequences It sets the default filters and comparators to the DNA filters and comparators)
- gnDNXSource (GnDNXSource implements the DNX file source)
- gnException
- gnExceptionCode
- gnFASSource (GnFASSource reads and writes FastA files)
- gnFastTranslator
- gnFeature (GnFeature stores sequence features in memory)
- gnFileContig (GnFileContig is used by source classes to track the location of sequence data on disk)
- gnFileSource (GnFileSource is a standard interface to all file based sources of genetic information)
- gnFilter
- gnFragmentSpec (GnFragmentSpec contains a list of specs which make up a sequence fragment)
- gnGBKSource (GnGBKSource is a GenBank sequence file reader)
- gnGenomeSpec (This class contains references to the sequence data, annotation, and other related header data for an organism's genome)
- gnLocation (This class is used to store sequence locations)
- gnMultiSpec (This class defines an interface for specs which have multiple subspecs containing sequence data)
- gnProteinSequence (GnProteinSequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators)
- gnRAWSource (GnRAWSource reads raw sequence data from a text file)
- gnRNASequence (GnRNASequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators)
- gnSEQSource (GnSEQSource is a SEQ file reader)
- gnSequence (GnSequence is the most commonly used class in libGenome)
- gnSourceFactory (GnSourceFactory is the middle man when acessing a sequence data source It tracks all data sources currently in use, ensuring that a particular data source is only opened and parsed once)
- gnSourceHeader (GnSourceHeader is used to store a sequence header which resides in another source)
- gnSourceQualifier (GnSourceQualifier is used to store a sequence qualifier which resides in another source)
- gnSourceSpec (GnSourceSpec stores sequence and annotation data from another source)
- gnStringHeader (GnStringHeader stores sequence related header information in memory)
- gnStringQualifier (GnStringQualifier stores a sequence qualifier in memory)
- gnStringSpec (GnStringSpec stores a sequence and annotation data in memory)
- gnTranslator (Facilitates the translation of ambiguous DNA and RNA sequences to protein sequence)