Main Page Namespace List Class Hierarchy Alphabetical List Compound List File List Compound Members File Members

# gnGBKSource.h File Reference

`#include "gn/gnDefs.h"`
`#include <string>`
`#include <fstream>`
`#include <vector>`
`#include "gn/gnFileSource.h"`
`#include "gn/gnFileContig.h"`
`#include "gn/gnSourceSpec.h"`
`#include "gn/gnSequence.h"`

Go to the source code of this file.

## Compounds
class | gnGBKSource
| gnGBKSource is a GenBank sequence file reader. More...
## Variables
const uint32 | SEQ_COLUMN_WIDTH = 80
const uint32 | SEQ_HEADER_NAME_LENGTH = 11
const uint32 | SEQ_SUBTAG_COLUMN = 5
const uint32 | SEQ_LOCUS_CIRCULAR_COLUMN = 43
const uint32 | SEQ_LOCUS_NAME_COLUMN = 13
const uint32 | SEQ_LOCUS_NAME_LENGTH = 10
const uint32 | SEQ_LOCUS_SIZE_LENGTH = 7
const uint32 | SEQ_LOCUS_DNATYPE_OFFSET = 33
const uint32 | SEQ_LOCUS_DNATYPE_LENGTH = 7
const uint32 | SEQ_LOCUS_DIVCODE_OFFSET = 52
const uint32 | SEQ_LOCUS_DIVCODE_LENGTH = 3
const uint32 | SEQ_LOCUS_DATE_OFFSET = 62
const uint32 | SEQ_LOCUS_DATE_LENGTH = 11
const uint32 | SEQ_FEATURE_LOC_OFFSET = 21
const uint32 | SEQ_BASES_INDEX_END = 9

## Variable Documentation

const uint32 SEQ_BASES_INDEX_END = 9

| Definition at line 41 of file gnGBKSource.h.

const uint32 SEQ_COLUMN_WIDTH = 80

| Definition at line 27 of file gnGBKSource.h.

const uint32 SEQ_FEATURE_LOC_OFFSET = 21

| Definition at line 40 of file gnGBKSource.h.

const uint32 SEQ_HEADER_NAME_LENGTH = 11

| Definition at line 28 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_CIRCULAR_COLUMN = 43

| Definition at line 30 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_DATE_LENGTH = 11

| Definition at line 39 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_DATE_OFFSET = 62

| Definition at line 38 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_DIVCODE_LENGTH = 3

| Definition at line 37 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_DIVCODE_OFFSET = 52

| Definition at line 36 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_DNATYPE_LENGTH = 7

| Definition at line 35 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_DNATYPE_OFFSET = 33

| Definition at line 34 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_NAME_COLUMN = 13

| Definition at line 31 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_NAME_LENGTH = 10

| Definition at line 32 of file gnGBKSource.h.

const uint32 SEQ_LOCUS_SIZE_LENGTH = 7

| Definition at line 33 of file gnGBKSource.h.

const uint32 SEQ_SUBTAG_COLUMN = 5

| Definition at line 29 of file gnGBKSource.h.