Member List

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# gnFileSource Member List

This is the complete list of members for gnFileSource, including all inherited members.

- Clone() const=0 `[pure virtual]`
- Close() `[virtual]`
- GetContigID(const string &name) const=0 `[pure virtual]`
- GetContigListLength() const=0 `[pure virtual]`
- GetContigName(const uint32 i) const=0 `[pure virtual]`
- GetContigSeqLength(const uint32 i) const=0 `[pure virtual]`
- GetFileContig(const uint32 contigI) const=0 `[pure virtual]`
- GetFilter() const `[inline, virtual]`
- GetOpenString() const `[inline, virtual]`
- GetSpec() const=0 `[pure virtual]`
- gnBaseSource() `[inline]`
- gnClone() `[inline]`
- gnFileSource() `[inline]`
- gnFileSource(const gnFileSource &gnfs)
- HasContig(const string &name) const=0 `[pure virtual]`
- m_ifstream `[protected]`
- m_newlineSize `[protected]`
- m_newlineType `[protected]`
- m_openString `[protected]`
- m_pFilter `[protected]`
- Open(string openString) `[virtual]`
- Open() `[virtual]`
- ParseStream(istream &fin)=0 `[private, pure virtual]`
- Read(const uint64 pos, char *buf, uint32 &bufLen) `[virtual]`
- SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)=0 `[pure virtual]`
- SetFilter(gnFilter *filter) `[inline, virtual]`
- ~gnBaseSource() `[inline, virtual]`
- ~gnClone() `[inline, virtual]`
- ~gnFileSource() `[inline, virtual]`