Graphs, Networks, and Trees
Author: TEI,Humanities Computing Unit, 13 Banbury Road, Oxford OX2 6NN, United Kingdom

| ## Text Encoding Initiative
### The XML Version of the TEI Guidelines # 21 Graphs, Networks, and Trees

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| Graphical representations are widely used for displaying relations among informational units because they help readers to visualize those relations and hence to understand them better. Two general types of graphical representations may be distinguished. Graphs, in the strictly mathematical sense, consist of points, often called nodes or vertices, and connections among them, called arcs, or under certain conditions, edges. Among the various types of graphs are networks and trees. Graphs generally and networks in particular are dealt with directly below. Trees are dealt with separately in sections 21.2 Trees and 21.3 Another Tree Notation.155 Charts, which typically plot data in two or more dimensions, including plots with orthogonal or radial axes, bar charts, pie charts, and the like. These can be described using the elements defined in the additional tag set for figures and graphics; see chapter 22 Tables, Formulae, and Graphics. The following DTD fragment shows the overall organization of the tag set discussed in the remainder of this chapter.
    <!-- 21.: Graphs, networks and trees-->
    [declarations from 21.1: Graphs inserted here ]

    [declarations from 21.2: Trees (basic method) inserted here ]

    [declarations from 21.3: Trees (alternate method) inserted here ]
    <!-- end of 21.-->
This tag set is made available as described in 3.3 Invocation of the TEI DTD; in a document which uses the markup described in this chapter, the document type declaration should contain the following declaration for the entity TEI.nets:
    <!ENTITY % TEI.nets 'INCLUDE'>
The entire document type declaration for an XML document using this additional tag set together with the prose base might look like this:
    <!DOCTYPE TEI.2 PUBLIC "-//TEI P4//DTD Main Document Type//EN"
                           "http://www.tei-c.org/P4X/DTD/tei2.dtd" [
        <!ENTITY % TEI.XML   'INCLUDE' >
        <!ENTITY % TEI.prose 'INCLUDE' >
        <!ENTITY % TEI.nets  'INCLUDE' >
     ]>
- Among the types of qualitative relations often represented by graphs are organizational hierarchies, flow charts, genealogies, semantic networks, transition networks, grammatical relations, tournament schedules, seating plans, and directions to people's houses. In developing recommendations for the encoding of graphs of various types, we have relied on their formal mathematical definitions and on the most common conventions for representing them visually. However, it must be emphasized that these recommendations do not provide for the full range of possible graphical representations, and deal only partially with questions of design, layout and placement. #### 21.1 Graphs and Digraphs Broadly speaking, graphs can be divided into two types: undirected and directed. An undirected graph is a set of nodes (or vertices) together with a set of pairs of those vertices, called arcs or edges. Each node in an arc of an undirected graph is said to be incident with that arc, and the two vertices which make up an arc are said to be adjacent. An directed graph is like an undirected graph except that the arcs are ordered pairs of nodes. In the case of directed graphs, the term edge is not used; moreover, each arc in an directed graph is said to be adjacent from the node from which the arc emanates, and adjacent to the node to which the arc is directed. We use the element `<graph>` to encode graphs as a whole, `<node>` to encode nodes or vertices, and `<arc>` to encode arcs or edges; arcs can also be encoded by attributes on the `<node>` element. These elements have the following descriptions and attributes: <graph> encodes a graph, which is a collection of nodes, and arcs which connect the nodes.
  type | describes the type of graph.
  label | gives a label for a graph.
  order | states the order of the graph, i.e., the number of its nodes.
  size | states the size of the graph, i.e., the number of its arcs.
- <node> encodes a node, a possibly labeled point in a graph.
  label | gives a label for a node.
  label2 | gives a second label for a node.
  value | provides the value of a node, which is a feature structure or other analytic element.
  type | provides a type for a node.
  adjFrom | gives the identifiers of the nodes which are adjacent from the current node.
  adjTo | gives the identifiers of the nodes which are adjacent to the current node.
  adj | gives the identifiers of the nodes which are both adjacent to and adjacent from the current node.
  inDegree | gives the in degree of the node, the number of nodes which are adjacent from the given node.
  outDegree | gives the out degree of the node, the number of nodes which are adjacent to the given node.
  degree | gives the degree of the node, the number of arcs with which the node is incident.
- <arc> encodes an arc, the connection from one node to another in a graph.
  label | gives a label for an arc.
  label2 | gives a second label for an arc.
  from | gives the identifier of the node which is adjacent from this arc.
  to | gives the identifier of the node which is adjacent to this arc.
Before proceeding, some additional terminology may be helpful. We define a path in a graph as a sequence of nodes n1, ..., nk such that there is an arc from each ni to ni+1 in the sequence. A cyclic path, or cycle is a path leading from a particular node back to itself. A graph that contains at least one cycle is said to be cyclic; otherwise it is acyclic. We say, finally, that a graph is connected if there is a path from some node to every other node in the graph; any graph that is not connected is said to be disconnected. Here is an example of an undirected, cyclic disconnected graph, in which the nodes are annotated with three-letter codes for airports, and the arcs connecting the nodes are represented by horizontal and vertical lines, with 90 degree bends used simply to avoid having to draw diagonal lines.
              .---LAX---.
              |         |
             LVG-------PHX---TUS    CIB

      Airline Connections in Southwestern USA
Next is a markup of the graph, using `<arc>` elements to encode the arcs.
    <graph type='undirected'
           id='CUG1'
           label='Airline Connections in Southwestern USA'
           order='5'
           size='4'>
      <node label='LAX' id='LAX' degree='2'/>
      <node label='LVG' id='LVG' degree='2'/>
      <node label='PHX' id='PHX' degree='3'/>
      <node label='TUS' id='TUS' degree='1'/>
      <node label='CIB' id='CIB' degree='0'/>
      <arc  from='LAX' to='LVG'/>
      <arc  from='LAX' to='PHX'/>
      <arc  from='LVG' to='PHX'/>
      <arc  from='PHX' to='TUS'/>
      </graph>
The `label` attribute on the `<graph>` element records a label for the graph; similarly, the `label` attribute on the `<node>` elements records the labels of those nodes. The `order` and `size` attributes on the `<graph>` element record the number of nodes and number of arcs in the graph respectively; these values are optional (since they can be computed from the rest of the graph), but if they are supplied, they must be consistent with the rest of the encoding. They can thus be used to help check that the graph has been encoded and transmitted correctly. The `degree` attribute on the `<node>` elements record the number of arcs that are incident with that node. It is optional (because redundant), but can be used to help in validity checking: if a value is given, it must be consistent with the rest of the information in the graph. Finally, the `from` and `to` attributes on the `<arc>` elements provide pointers to the nodes connected by those arcs. Since the graph is undirected, no directionality is implied by the use of the `from` and `to` attributes; the values of these attributes could be interchanged in each arc without changing the graph. The `adj`, `adjFrom`, and `adjTo` attributes of the `<node>` element provide an alternative method of representing unlabeled arcs, their values being pointers to the nodes which are adjacent to or from that node. The `adj` attribute is to be used for undirected graphs, and the `adjFrom` and `adjTo` attributes for directed graphs. It is a semantic error for the directed adjacency attributes to be used in an undirected graph, and vice versa. Here is a markup of the preceding graph, using the `adj` attribute to represent the arcs.
    <graph type='undirected'
           id='CUG2'
           label='Airline Connections in Southwestern USA'
           order='5'
           size='4'>
      <node label='LAX' id='LAX' degree='2' adj='LVG PHX'/>
      <node label='LVG' id='LVG' degree='2' adj='LAX PHX'/>
      <node label='PHX' id='PHX' degree='3' adj='LAX LVG TUS'/>
      <node label='TUS' id='TUS' degree='1' adj='PHX'/>
      <node label='CIB' id='CIB' degree='0'/>
      </graph>
Note that each arc is represented twice in this encoding of the graph. For example, the existence of the arc from LAX to LVG can be inferred from each of the first two `<node>` elements in the graph. This redundancy, however, is not required: it suffices to describe an arc in any one of the three places it can be described (either adjacent node, or in a separate `<arc>` element). Here is a less redundant representation of the same graph.
    <graph type='undirected'
           id='CUG3'
           label='Airline Connections in Southwestern USA'
           order='5'
           size='4'>
      <node label='LAX' id='LAX' degree='2' adj='LVG PHX'/>
      <node label='LVG' id='LVG' degree='2' adj='PHX'/>
      <node label='PHX' id='PHX' degree='3' adj='TUS'/>
      <node label='TUS' id='TUS' degree='1'/>
      <node label='CIB' id='CIB' degree='0'/>
      </graph>
Although in many cases the `<arc>` element is redundant (since arcs can be described using the adjacency attributes of their adjacent nodes), it has nevertheless been included in the tag set, in order to allow the convenient specification of identifiers, display or rendition information, and labels for each arc (using the attributes `id`, `rend`, and `label`). Next, let us modify the preceding graph by adding directionality to the arcs. Specifically, we now think of the arcs as specifying selected routes from one airport to another, as indicated by the direction of the arrowheads in the following diagram.
              +-<-LAX-<-+
              |         |
             LVG--->---PHX--->---TUS   CIB
                        |         |
                        +----<----+

      Selected Airline Routes in Southwestern USA
Here is an encoding of this graph, using the `<arc>` element to designate the arcs.
    <graph type='directed'
           id='RDG1'
           label='Selected Airline Routes in Southwestern USA'
           order='5'
           size='5'>
       <node label='LAX' id='LAX' inDegree='1' outDegree='1'/>
       <node label='LVG' id='LVG' inDegree='1' outDegree='1'/>
       <node label='PHX' id='PHX' inDegree='2' outDegree='2'/>
       <node label='TUS' id='TUS' inDegree='1' outDegree='1'/>
       <node label='CIB' id='CIB' inDegree='0' outDegree='0'/>
       <arc  from='LAX' to='LVG'/>
       <arc  from='LVG' to='PHX'/>
       <arc  from='PHX' to='LAX'/>
       <arc  from='PHX' to='TUS'/>
       <arc  from='TUS' to='PHX'/>
       </graph>
Here is another encoding of the graph, using the `adjTo` and `adjFrom` attributes on nodes to designate the arcs.
    <graph type='directed'
           id='RDG2'
           label='Selected Airline Routes in Southwestern USA'
           order='5'
           size='5'>
       <node label='LAX' id='LAX' inDegree='1'
             outDegree='1' adjTo='LVG' adjFrom='PHX'/>
       <node label='LVG' id='LVG' inDegree='1'
             outDegree='1' adjFrom='LAX' adjTo='PHX'/>
       <node label='PHX' id='PHX' inDegree='2'
             outDegree='2' adjTo='LAX TUS' adjFrom='LVG TUS'/>
       <node label='TUS' id='TUS' inDegree='1'
             outDegree='1' adjTo='PHX' adjFrom='PHX'/>
       <node label='CIB' id='CIB' inDegree='0' outDegree='0'/>
       </graph>
If we wish to label the arcs, say with flight numbers, then `<arc>` elements must be used to carry the `label` attribute, as in the following example.
    <graph type='directed'
           id='RDG1'
           label='Selected Airline Routes in Southwestern USA'
           order='5'
           size='5'>
       <node label='LAX' id='LAX'/>
       <node label='LVG' id='LVG'/>
       <node label='PHX' id='PHX'/>
       <node label='TUS' id='TUS'/>
       <node label='CIB' id='CIB'/>
       <arc  from='LAX' to='LVG' label='SW117'/>
       <arc  from='LVG' to='PHX' label='SW711'/>
       <arc  from='PHX' to='LAX' label='AA218'/>
       <arc  from='PHX' to='TUS' label='AW229'/>
       <arc  from='TUS' to='PHX' label='AW225'/>
       </graph>
The formal declarations of the `<graph>`, `<node>` and `<arc>` elements are as follows.
    <!-- 21.1: Graphs-->
    <!ELEMENT graph %om.RR; (  (( node, (%m.Incl;)* )+, ( arc,  (%m.Incl;)* )*)
                       | (( arc,  (%m.Incl;)* )+, ( node, (%m.Incl;)* )+)) >
    <!ATTLIST graph
          %a.global;
          type CDATA #IMPLIED
          label CDATA #IMPLIED
          order CDATA #IMPLIED
          size CDATA #IMPLIED
          TEIform CDATA 'graph'  >
    <!ELEMENT node %om.RO; EMPTY>
    <!ATTLIST node
          %a.global;
          label CDATA #IMPLIED
          label2 CDATA #IMPLIED
          value IDREF #IMPLIED
          type CDATA #IMPLIED
          adjTo IDREFS #IMPLIED
          adjFrom IDREFS #IMPLIED
          adj IDREFS #IMPLIED
          inDegree CDATA #IMPLIED
          outDegree CDATA #IMPLIED
          degree CDATA #IMPLIED
          TEIform CDATA 'node'  >
    <!ELEMENT arc %om.RO; EMPTY>
    <!ATTLIST arc
          %a.global;
          label CDATA #IMPLIED
          label2 CDATA #IMPLIED
          from IDREF #REQUIRED
          to IDREF #REQUIRED
          TEIform CDATA 'arc'  >
    <!-- end of 21.1-->
##### 21.1.1 Transition Networks For encoding transition networks and other kinds of directed graphs in which distinctions among types of nodes must be made, the `type` attribute is provided for `<node>` elements. In the following example, the initial and final nodes (or states) of the network are distinguished. It can be understood as accepting the set of strings obtained by traversing it from its initial node to its final node, and concatenating the labels.
                 OLD      MAN      COMES
                +->-+   +-->----o---->---+
                |   |   |                |
                \   /   |                |
            THE  \ /    |                |
    (8)   o-->----o-----+                o
                        |                |
                        |                |
                        |                |
                        +-->----o---->---+
                          MEN       COME

    <graph type='transition network'
           id='SS8'
           label='(8)'
           order='5'
           size='6'>
       <node id='Q0' inDegree='0' outDegree='1' type='initial'/>
       <node id='Q1' inDegree='2' outDegree='3'/>
       <node id='Q2' inDegree='1' outDegree='1'/>
       <node id='Q3' inDegree='1' outDegree='1'/>
       <node id='Q4' inDegree='2' outDegree='0' type='final'/>
       <arc  from='q0' to='q1' label='THE'/>
       <arc  from='q1' to='q1' label='OLD'/>
       <arc  from='q1' to='q2' label='MAN'/>
       <arc  from='q1' to='q3' label='MEN'/>
       <arc  from='q2' to='q4' label='COMES'/>
       <arc  from='q3' to='q4' label='COME'/>
       </graph>
A finite state transducer has two labels on each arc, and can be thought of as representing a mapping from one sequence of labels to the other. The following example represents a transducer for translating the English strings accepted by the network in the preceding example into French. The nodes have been annotated with numbers, for convenience.
             THE         MAN      COMES
          +--->---1------->-----4--->---+
          |   L'  |     HOMME     VIENT |
          |       |                     |
          |    OLD|VIEIL                |
          |       |                     |
          | THE   |                     |
    (8)   0-->----2                     6
          |  LE  / \                    |
          |     /   \                   |
          |    /     \                  |
          |    | OLD |                  |
          |    +-->--+                  |
          |     VIEIL                   |
          |  THE        MEN       COME  |
          +--->---3------>----5---->----+
             LES / \   HOMMES   VIENNENT
                /   \
               /     \
               | OLD |
               +-->--+
                VIEUX
    <graph type='transducer'
           order='7'
           size='10'>
       <node id='T0' label='0' inDegree='0' outDegree='3' type='initial'/>
       <node id='T1' label='1' inDegree='2' outDegree='1'/>
       <node id='T2' label='2' inDegree='2' outDegree='2'/>
       <node id='T3' label='3' inDegree='2' outDegree='2'/>
       <node id='T4' label='4' inDegree='1' outDegree='1'/>
       <node id='T5' label='5' inDegree='1' outDegree='1'/>
       <node id='T6' label='6' inDegree='2' outDegree='0' type='final'/>
       <arc  from='t0' to='t1' label='THE' label2="L'"/>
       <arc  from='t0' to='t2' label='THE' label2='LE'/>
       <arc  from='t0' to='t3' label='THE' label2='LES'/>
       <arc  from='t1' to='t4' label='MAN' label2='HOMME'/>
       <arc  from='t2' to='t1' label='OLD' label2='VIEIL'/>
       <arc  from='t2' to='t2' label='OLD' label2='VIEIL'/>
       <arc  from='t3' to='t3' label='OLD' label2='VIEUX'/>
       <arc  from='t3' to='t5' label='MEN' label2='HOMMES'/>
       <arc  from='t4' to='t6' label='COMES' label2='VIENT'/>
       <arc  from='t5' to='t6' label='COME' label2='VIENNENT'/>
       </graph>
##### 21.1.2 Family Trees The next example provides an encoding a portion of a `family tree', in which nodes are used to represent individuals, and parents of individuals, and arcs are used to represent common parentage and descent links. Let us suppose, further, that information about individuals is contained in feature structures, which are contained in feature-structure libraries elsewhere in the document (see 16.3 Feature, Feature-Structure and Feature-Value Libraries). We can use the `value` attribute on `<node>` elements to point to those feature structures. Assume that, in some particular representation of the graph, nodes representing females are framed by circles, nodes representing males are framed by boxes, and nodes representing parents are framed by diamonds.
                                Mo     Fa
                      Katherine->--K+A--<-Amberley
                                    |
                            So      |    Da
                       +----<-------+----->----+
                       |            | So       |
                    Bertrand        +->-+    Rachel
                       |                |
                       |              Frank
             Mo     Fa | Fa     Mo
       Peter->--P+B--<-+->--D+B--<-Dora
                 |           |
              So |        Da | So
             +-<-+     +--<--+-->--+
             |         |           |
           Conrad     Kate        John
    <graph type='family tree' order='13' size='12'>
      <node id='KATHR'  label='Katherine'
            value='kr1' inDegree='0' outDegree='1'/>
      <node id='AMBER'  label='Amberley'
            value='ar1' inDegree='0' outDegree='1'/>
      <node id='KAR'  label='K+A'
            inDegree='2' outDegree='3'/>
      <node id='BERTR'  label='Bertrand'
            value='br1' inDegree='1' outDegree='2'/>
      <node id='PETER'  label='Peter'
            value='pr1' inDegree='0' outDegree='1'/>
      <node id='DORAR'  label='Dora'
            value='dr1' inDegree='0' outDegree='1'/>
      <node id='PBR'  label='P+B'
            inDegree='2' outDegree='1'/>
      <node id='DBR'  label='D+B'
            inDegree='2' outDegree='2'/>
      <node id='FRANR'  label='Frank'
            value='fr1' inDegree='1' outDegree='0'/>
      <node id='RACHR'  label='Rachel'
            value='rr1' inDegree='1' outDegree='0'/>
      <node id='CONRR'  label='Conrad'
            value='cr1' inDegree='1' outDegree='0'/>
      <node id='KATER'  label='Kate'
            value='kr2' inDegree='1' outDegree='0'/>
      <node id='JOHNR'  label='John'
            value='jr1' inDegree='1' outDegree='0'/>
      <arc label='Mo' from='KathR' to='KAR'/>
      <arc label='Fa' from='AmbeR' to='KAR'/>
      <arc label='So' from='KAR' to='BertR'/>
      <arc label='So' from='KAR' to='FranR'/>
      <arc label='Da' from='KAR' to='RachR'/>
      <arc label='Mo' from='PeteR' to='PBR'/>
      <arc label='Fa' from='BertR' to='PBR'/>
      <arc label='So' from='PBR' to='ConrR'/>
      <arc label='Mo' from='DoraR' to='DBR'/>
      <arc label='Fa' from='BertR' to='DBR'/>
      <arc label='Da' from='DBR' to='KateR'/>
      <arc label='So' from='DBR' to='JohnR'/>
      </graph>
##### 21.1.3 Historical Interpretation For our final example, we represent graphically the relationships among various geographic areas mentioned in a seventeenth-century Scottish document. The document itself is a `sasine', which records a grant of land from the earl of Argyll to one Donald McNeill, and reads in part as follows (abbreviations have been expanded silently, and ‘[...]’ marks illegible passages): Item instrument of Sasine given the said Hector Mcneil confirmed and dated 28 May 1632 [...] at Edinburgh upon the 15 June 1632 Item ane charter granted by Archibald late earl of Argyle and Donald McNeill of Gallachalzie wh makes mention that ... the said late Earl yields and grants to the said Donald MacNeill ... All and hail the two merk land of old extent of Gallachalzie with the pertinents by and in the lordship of Knapdale within the sherrifdome of Argyll [description of other lands granted follows ...] This Charter is dated at Inverary the 15th May 1669 In this example, we are concerned with the land and pertinents (i.e. accompanying sources of revenue) described as ‘the two merk land of old extent of Gallachalzie with the pertinents by and in the lordship of Knapdale within the sherrifdom of Argyll’. The passage concerns the following pieces of land: the Earl of Argyll's land (i.e. the lands granted by this clause of the sasine) two mark of land in Gallachalzie the pertinents for this land the Lordship of Knapdale the sherrifdom of Argyll We will represent these geographic entities as nodes in a graph. Arcs in the graph will represent the following relationships among them: containment (INCLUDE) location within (IN) contiguity (BY) constituency (PART OF) Note that these relationships are logically related: ‘include’ and ‘in’, for example, are inverses of each other: the Earl of Argyll's land includes the parcel in Gallachalzie, and the parcel is therefore in the Earl of Argyll's land. Given an explicit set of inference rules, an appropriate application could use the graph we are constructing to infer the logical consequences of the relationships we identify. Let us assume that feature-structure analyses are available which describe Gallachalzie, Knapdale, and Argyll. We will link to those feature structures using the `value` attribute on the nodes representing those places. However, there may be some uncertainty as to which noun phrase is modified by the phrase ‘within the sheriffdome of Argyll’: perhaps the entire lands (land and pertinents) are in Argyll, perhaps just the pertinents are, or perhaps only Knapdale is (together with the portion of the pertinents which is in Knapdale). We will represent all three of these interpretations in the graph; they are, however, mutually exclusive, which we represent using the `excl` attribute defined in chapter 15 Simple Analytic Mechanisms.156 We represent the graph and its encoding as follows, where the dotted lines in the graph indicate the mutually exclusive arcs; in the encoding, we use the `exclude` attribute to indicate those arcs.
                  Earl of Argyll's land
                (land described in sasine)
                          | | |
          ,-<-INCLUDE--<--' + '->-INCLUDE---> Pertinents
          |                 :                  :  |   |
     Gallachalzie          IN  ...<..IN..<.....:  |   |
                            :  :                  |   |
                            :  :             INCLUDE INCLUDE
                            :  :              |           |
                            :  :   (part of pertinents)  (part)
                            :  :              |           |
                            :  :              BY         PART OF
                            :  :              |           |
                            :  :          Lordship of Knapdale
                            :  :                   :
                            :  :  ...<.IN..<.......:
                            :  :  :
                    Sherrifdom of Argyll
The graph formalizes the following relationships: the Earl of Argyll's land ‘includes' (the parcel of land in) Gallachalzie the Earl of Argyll's land ‘includes' the pertinents of that parcel the pertinents are (in part) ‘by' the Lordship of Knapdale the pertinents are (in part) ‘part of' the Lordship of Knapdale the Earl of Argyll's land, or the pertinents, or the Lordship of Knapdale, is ‘in' the Sherrifdom of Argyll We encode the graph thus:
    <graph type='directed' order='7' size='9'>
      <node id='EARL' label="Earl of Argyll's land"/>
      <node id='GALL' label="Gallachalzie" value='gallfs'/>
      <node id='PERT' label="Pertinents"/>
      <node id='PER1' label="Pertinents part"/>
      <node id='PER2' label="Pertinents part"/>
      <node id='KNAP' label="Lordship of Knapdale"  value='knapfs'/>
      <node id='ARGY' label="Sherrifdome of Argyll" value='argyfs'/>
      <arc  id='EARLGALL' label="INCLUDE" from='earl' to='gall'/>
      <arc  id='EARLARGY' label="IN" from='earl' to='argy'
            exclude="pertargy knapargy"/>
      <arc  id='EARLPERT' label="INCLUDE" from='earl' to='pert'/>
      <arc  id='PERTPER1' label="INCLUDE" from='pert' to='per1'/>
      <arc  id='PERTPER2' label="INCLUDE" from='pert' to='per2'/>
      <arc  id='PERTARGY' label="IN" from='pert' to='argy'
            exclude="earlargy knapargy"/>
      <arc  id='PER1KNAP' label="BY" from='per1' to='knap'/>
      <arc  id='PER2KNAP' label="PART OF" from='per2' to='knap'/>
      <arc  id='KNAPARGY' label="IN" from='knap' to='argy'
            exclude="earlargy pertargy"/>
      </graph>
- #### 21.2 Trees A tree is a connected acyclic graph. That is, it is possible in a tree graph to follow a path from any vertex to any other vertex, but there are no paths that lead from any vertex to itself. A rooted tree is a directed graph based on a tree; that is, the arcs in the graph correspond to the arcs of a tree such that there is exactly one node, called the root, for which there is a path from that node to all other nodes in the graph. For our purposes, we may ignore all trees except for rooted trees, and hence we shall use the `<tree>` element for rooted trees, and the `<root>` element for its root. The nodes adjacent to a given node are called its children, and the node adjacent from a given node is called its parent. Nodes with both a parent and children are called internal nodes, for which we use the `<iNode>` element. A node with no children is tagged as a `<leaf>`. If the children of a node are ordered from left to right, then we say that that node is ordered. If all the nodes of a tree are ordered, then we say that the tree is an ordered tree. If some of the nodes of a tree are ordered and others are not, then the tree is a partially ordered tree. The ordering of nodes and trees may be specified by an attribute; we take the default ordering for trees to be ordered, that roots inherit their ordering from the trees in which they occur, and internal nodes inherit their ordering from their parents. Finally, we permit a node to be specified as following other nodes, which (when its parent is ordered) it would be assumed to precede, giving rise to crossing arcs. The elements used for the encoding of trees have the following descriptions and attributes. <tree> encodes a tree, which is made up of a root, internal nodes, leaves, and arcs from root to leaves.
  arity | gives the maximum number of children of the root and internal nodes of the tree.
  ord | indicates whether or not the tree is ordered, or if it is partially ordered.
  order | gives the order of the tree, i.e., the number of its nodes.
- <root> represents the root node of a tree.
  label | gives a label for a root node.
  value | provides the value of the root, which is a feature structure or other analytic element.
  children | provides a list of identifiers of the elements which are the children of the root node.
  ord | indicates whether or not the root is ordered.
  outDegree | gives the out degree of the root, the number of its children.
- <iNode> represents an intermediate (or internal) node of a tree.
  label | gives a label for an intermediate node.
  value | provides the value of an intermediate node, which is a feature structure or other analytic element.
  children | provides a list of identifiers of the elements which are the children of the intermediate node.
  parent | provides the identifier of the element which is the parent of this node.
  ord | indicates whether or not the internal node is ordered.
  follow | provides an identifier of the element which this node follows.
  outDegree | gives the out degree of an intermediate node, the number of its children.
- <leaf> encodes the leaves (terminal nodes) of a tree.
  label | gives a label for a leaf.
  value | provides the value of a leaf, which is a feature structure or other analytic element.
  parent | provides the identifier of parent of a leaf.
  follow | provides an identifier of an element which this leaf follows.
Here is an example of a tree. It represents the order in which the operators of addition (symbolized by `+`), exponentiation (symbolized by `**`) and division (symbolized by `/`) are applied in evaluating the arithmetic formula `((a**2)+(b**2))/((a+b)**2)` . In drawing the graph, the root is placed on the far right, and directionality is presumed to be to the left.
    a--,
       |-**-,
    2--'    |
            |-+--,
    b--,    |    |
       |-**-'    |
    2--'         |
                 |-/
    a--,         |
       |-+--,    |
    b--'    |    |
            |-**-'
            |
    2-------'
    <tree n='ex1' arity='2' order='12'>
       <root  label='/'  id='DIV1'               children='plu1 exp1'/>
       <iNode label='+'  id='PLU1'   parent='div1' children='exp2 exp3'/>
       <iNode label='**' id='EXP1'   parent='div1' children='plu2 num2.3'/>
       <iNode label='**' id='EXP2'   parent='plu1' children='vara1 num2.1'/>
       <iNode label='**' id='EXP3'   parent='plu1' children='varb1 num2.2'/>
       <iNode label='+'  id='PLU2'   parent='exp1' children='vara2 varb2'/>
       <leaf  label='a'  id='VARA1'  parent='exp2'/>
       <leaf  label='2'  id='NUM2.1' parent='exp2'/>
       <leaf  label='b'  id='VARB1'  parent='exp3'/>
       <leaf  label='2'  id='NUM2.2' parent='exp3'/>
       <leaf  label='a'  id='VARA2'  parent='plu2'/>
       <leaf  label='b'  id='VARB2'  parent='plu2'/>
       <leaf  label='2'  id='NUM2.3' parent='exp1'/>
       </tree>
In this encoding, the `arity` attribute represents the arity of the tree, which is the greatest value of the `outDegree` attribute for any of the nodes in the tree. If, as in this case, `arity='2'`, we say that the tree is a binary tree. Since the left-to-right (or top-to-bottom!) order of the children of the two `+` nodes does not affect the arithmetic result in this case, we could represent in this tree all of the arithmetically equivalent formulas involving its leaves, by specifying the attribute `ord="N"` on those two `<iNode>` elements, the attribute `ord="Y"` on the `<root>` and other `<iNode>` elements, and the attribute `ord="partial"` on the `<tree>` element, as follows.
    <tree n='ex2' ord='partial' arity='2' order='13'>
     <root  label='/'  id='DIV1'   ord='Y'             children='plu1 exp1'/>
     <iNode label='+'  id='PLU1'   ord='N' parent='div1' children='exp2 exp3'/>
     <iNode label='**' id='EXP1'   ord='Y' parent='div1' children='plu2 num2.3'/>
     <iNode label='**' id='EXP2'   ord='Y' parent='plu1' children='vara1 num2.1'/>
     <iNode label='**' id='EXP3'   ord='Y' parent='plu1' children='varb1 num2.2'/>
     <iNode label='+'  id='PLU2'   ord='N' parent='exp1' children='vara2 varb2'/>
     <leaf  label='a'  id='VARA1'        parent='exp2'/>
     <leaf  label='2'  id='NUM2.1'       parent='exp2'/>
     <leaf  label='b'  id='VARB1'        parent='exp3'/>
     <leaf  label='2'  id='NUM2.2'       parent='exp3'/>
     <leaf  label='a'  id='VARA2'        parent='plu2'/>
     <leaf  label='b'  id='VARB2'        parent='plu2'/>
     <leaf  label='2'  id='NUM2.3'       parent='exp1'/>
     </tree>
This encoding represents all of the following: `((a**2)+(b**2))/((a+b)**2)` `((b**2)+(a**2))/((a+b)**2)` `((a**2)+(b**2))/((b+a)**2)` `((b**2)+(a**2))/((a+b)**2)` Linguistic phrase structure is very commonly represented by trees. Here is an example of phrase structure represented by an ordered tree with its root at the top, and a possible encoding.
          ,---PP---,
          |        |
          P    ,--NP--,
          |    |      |
         with Art     N
               |      |
              the periscope
    <tree n='ex3' arity='2' order='8'>
       <root  id='PP1'                 children='P1 NP1'     label='PP'/>
       <iNode id='P1'    parent='PP1'  children='with1'      label='P'/>
       <leaf  id='WITH1' parent='P1'                         label='with'/>
       <iNode id='NP1'   parent='PP1'  children='the1 peri1' label='NP'/>
       <iNode id='ART1'  parent='NP1'  children='the1'       label='Art'/>
       <leaf  id='THE1'  parent='Art1'                       label='the'/>
       <iNode id='N1'    parent='NP1'  children='peri1'      label='N'/>
       <leaf  id='PERI1' parent='N1'                         label='periscope'/>
       </tree>
Finally, here is an example of an ordered tree, in which a particular node which ordinarily would precede another is specified as following it. In the drawing, the `xxx` symbol indicates that the arc from VB to PT crosses the arc from VP to PN.
           ,--VP--,
           |      |
       ,--VB-----xxx--,
       |          |   |
       VB         PN  PT
       |          |   |
      look       them up
    <tree n='ex4' arity='2' order='8'>
       <leaf  label='look' id='LOOK1' parent='VB2'/>
       <leaf  label='them' id='THEM1' parent='PN1'/>
       <leaf  label='up'   id='UP1'   parent='PT1'/>
       <iNode label='VB'   id='VB2'   parent='VB1' children='look1'/>
       <iNode label='PN'   id='PN1'   parent='VP1' children='them1' />
       <iNode label='PT'   id='PT1'   parent='VB1' children='up1' follow='PN1'/>
       <iNode label='VB'   id='VB1'   parent='VP1' children='VB2 PT1'/>
       <root  label='VP'   id='VP1'              children='VB1 PN1'/>
       </tree>
The formal declarations of the `<tree>`, `<root>`, `<iNode>` and `<leaf>` elements are as follows.
    <!-- 21.2: Trees (basic method)-->
    <!ELEMENT tree %om.RR; ((leaf | iNode)*, root, (leaf | iNode)*)>
    <!ATTLIST tree
          %a.global;
          label CDATA #IMPLIED
          arity CDATA #IMPLIED
          ord (Y | N | partial) "Y"
          order CDATA #IMPLIED
          TEIform CDATA 'tree'  >
    <!ELEMENT root %om.RO; EMPTY>
    <!ATTLIST root
          %a.global;
          label CDATA #IMPLIED
          value IDREF #IMPLIED
          children IDREFS #IMPLIED
          ord (Y | N) #IMPLIED
          outDegree CDATA #IMPLIED
          TEIform CDATA 'root'  >
    <!ELEMENT iNode %om.RO; EMPTY>
    <!ATTLIST iNode
          %a.global;
          label CDATA #IMPLIED
          value IDREF #IMPLIED
          children IDREFS #REQUIRED
          parent IDREF #IMPLIED
          ord (Y | N) #IMPLIED
          follow IDREF #IMPLIED
          outDegree CDATA #IMPLIED
          TEIform CDATA 'iNode'  >
    <!ELEMENT leaf %om.RO; EMPTY>
    <!ATTLIST leaf
          %a.global;
          label CDATA #IMPLIED
          value IDREF #IMPLIED
          parent IDREF #IMPLIED
          follow IDREF #IMPLIED
          TEIform CDATA 'leaf'  >
    <!-- end of 21.2-->
- #### 21.3 Another Tree Notation In this section, we present an alternative to the method of representing the structure of ordered rooted trees that is given in section 21.2 Trees, which is based on the observation that any node of such a tree can be thought of as the root of the subtree that it dominates. Thus subtrees can be thought of as the same type as the trees they are embedded in, hence the designation `<eTree>`, for embedding tree. Whereas in a `<tree>`, the relationship among the parts is indicated by the `children` attribute, and by the names of the elements `<root>`, `<iNode>` and `<leaf>`, the relationship among the parts of an `<eTree>` is indicated simply by the arrangement of their content. However, we have chosen to enable encoders to distinguish the terminal elements of an `<eTree>` by means of the empty `<eLeaf>` element, though its use is not required; the `<eTree>` element can also be used to identify the terminal nodes of `<eTree>` elements. We also provide a `<triangle>` element, which can be thought of as an underspecified `<eTree>`, that is an `<eTree>` in which certain information has been left out. In addition, we provide a `<forest>` element, which consists of one or more `<tree>`, `<eTree>` or `<triangle>` elements, and a `<forestGrp>` element, which consists of one or more `<forest>` elements. The elements used for the encoding of embedding trees and the units containing them have the following descriptions and attributes. <eTree> provides an alternative to tree element for representing ordered rooted tree structures.
  label | gives a label for an embedding tree.
  value | provides the value of an embedding tree, which is a feature structure or other analytic element.
- <triangle> provides for an underspecified eTree, that is, an eTree with information left out.
  label | gives a label for an underspecified embedding tree.
  value | provides the value of a triangle, which is the identifier of a feature structure or other analytic element.
- <eLeaf> provides explicitly for a leaf of an embedding tree, which may also be encoded with the eTree element.
  label | gives a label for a leaf of an embedding tree.
  value | provides the value of an embedding leaf, which is a feature structure or other analytic element.
- <forest> provides for groups of rooted trees.
  type | identifies the type of the forest.
- <forestGrp> provides for groups of forests.
  type | identifies the type of the forest group.
Like the `<root>`, `<iNode>` and `<leaf>` of a `<tree>`, the `<eTree>`, `<triangle>` and `<eLeaf>` elements may also have `label` and `value` attributes. To illustrate the use of the `<eTree>` and `<eLeaf>` elements, here is an encoding of the second example in section 21.2 Trees, repeated here for convenience.
          ,---PP---,
          |        |
          P    ,--NP--,
          |    |      |
         with Art     N
               |      |
              the periscope
    <eTree n='ex1' label='PP'>
       <eTree label='P'><eLeaf label='with'/></eTree>
       <eTree label='NP'>
          <eTree label='Art'><eLeaf label='the'/></eTree>
          <eTree label='N'><eLeaf label='periscope'/></eTree>
          </eTree>
       </eTree>
Next, we provide an encoding, using the `<triangle>` element, in which the internal structure of the `<eTree>` labeled `NP` is omitted.
          ,---PP----,
          |         |
          P        NP
          |       /  \
         with    /    \
                /______\
              the periscope
    <eTree n='ex2' label='PP'>
       <eTree label='P'><eLeaf label='with'></eTree>
       <triangle label='NP'><eLeaf label='the periscope'></triangle>
       </eTree>
Ambiguity involving alternative tree structures associated with the same terminal sequence can be encoded relatively conveniently using a combination of the `exclude` and `copyOf` attributes described in sections 14.8 Alternation and 14.6 Identical Elements and Virtual Copies. In the simplest case, an `<eTree>` may be part of the content of exactly one of two different `<eTree>` elements. To mark it up, the embedded `<eTree>` may be fully specified within one of the embedding `<eTree>` elements to which it may belong, and a virtual copy, specified by the `copyOf` attribute, may appear on the other. In addition, each of the embedded elements in question is specified as excluding the other, using the `exclude` attribute. To illustrate, consider the English phrase ‘see the vessel with the periscope', which may be considered to be structurally ambiguous, depending on whether the phrase ‘with the periscope' is a modifier of the phrase ‘the vessel' or a modifier of the phrase ‘see the vessel'. This ambiguity is indicated in the sketch of the ambiguous tree by means of the dotted-line arcs. The markup using the `copyOf` and `exclude` attributes follows the sketch.
          ,--------VP....................
          |        |                    :
          V   ,----NP.......         ,--PP--,
          |   |    |       :         |      |
         see Art   N    ,--PP--,     P    ,-NP-,
              |    |    |      |     |    |    |
             the vessel P    ,-NP-, with Art   N
                        |    |    |       |    |
                       with Art   N      the periscope
                             |    |
                            the periscope
    <eTree n='ex3' label='VP'>
       <eTree label='V'><eLeaf label='see'/></eTree>
       <eTree label='NP'>
          <eTree label='Art'><eLeaf label='the'/></eTree>
          <eTree label='N'><eLeaf label='vessel'/></eTree>
          <eTree id='PPA' exclude='ppb' label='PP'>
             <eTree label='P'><eLeaf label='with'/></eTree>
             <eTree label='NP'>
                <eTree label='Art'><eLeaf label='the'/></eTree>
                <eTree label='N'><eLeaf label='periscope'/></eTree>
                </eTree>
             </eTree>
          </eTree>
       <eTree id='PPB' copyOf='ppa' exclude='ppa' label='PP'></eTree>
       </eTree>
To indicate that one of the alternatives is selected, one may specify the `select` attribute on the highest `<eTree>` as either `select="ppa"` or `select="ppb"`; see section 14.8 Alternation. Depending on the grammar one uses to associate structures with examples like ‘see the man with the periscope', the representations may be more complicated than this. For example, adopting a version of the X-bar theory of phrase structure originated by Jackendoff,157 the attachment of a modifier may require the creation of an intermediate node which is not required when the attachment is not made, as shown in the following diagram. A possible encoding of this ambiguous structure immediately follows the diagram.
        ..............VP......................
        :                                    :
     ,--V'--,                          ,-----V'------,
     |      |                          |             |
     V    ,-NP--,                   ,--V'--,      ,--PP--,
     |    |     |                   |      |      |      |
    see  Spec ,-N'--,               V    ,-NP-,   P    ,-NP-,
          |   |     |               |    |    |   |    |    |
         the  N'  ,-PP---,         see  Spec  N' with Spec  N'
              |   |      |               |    |        |    |
              N   P    ,-NP-,           the   N       the   N
              |   |    |    |                 |             |
          vessel with Spec  N'             vessel        periscope
                       |    |
                      the   N
                            |
                         periscope
    <eTree n='ex4' label="VP">
       <eTree id='VBARA' exclude='VBARB' label="V'">
          <eTree id='VA' label="V"><eLeaf label="see"/></eTree>
          <eTree label="NP">
             <eTree id='SPEC1A' label="Spec"><eLeaf label="the"/></eTree>
             <eTree label="N'">
                <eTree id='NBAR2A' label="N'">
                   <eTree label="N"><eLeaf label="vessel"/></eTree>
                   </eTree>
                <eTree id='PPA' label="PP">
                   <eTree label="P"><eLeaf label="with"/></eTree>
                   <eTree label="NP">
                      <eTree label="Spec"><eLeaf label="the"/></eTree>
                      <eTree label="N'">
                         <eTree label="N"><eLeaf label="periscope"/></eTree>
                         </eTree>
                      </eTree> </eTree> </eTree> </eTree> </eTree>
       <eTree id='VBARB' exclude='VBARA' label="V'">
          <eTree label="V'">
             <eTree id='VB' copyOf='VA' label="V"></eTree>
             <eTree label="NP">
                <eTree id='SPEC1B' copyOf='SPEC1A' label="Spec"></eTree>
                <eTree id='NBAR2B' copyOf='NBAR2A' label="N'"></eTree>
                </eTree>
             </eTree>
          <eTree id='PPB' copyOf='PPA' label="PP"></eTree>
          </eTree>
       </eTree>
A derivation in a generative grammar is often thought of as a set of trees. To encode such a derivation, one may use the `<forest>` element, in which the trees may be marked up using the `<tree>`, the `<eTree>` or the `<triangle>` element. The `type` attribute may be used to specify what kind of derivation it is. Here is an example of a two-tree forest, involving application of the `wh-movement' transformation in the derivation of ‘what you do' (as in ‘this is what you do') from the underlying ‘you do what'.158
         ,--S'--,                 ,--S'--,
         |      |                 |      |
        COMP ,--S--,             COMP ,--S--,
         |   |     |              |   |     |
         e   NP  ,-VP-,           NP  NP  ,-VP-,
             |   |    |           |   |   |    |
            you  V    NP        what you  V    NP
                 |    |                   |    |
                do   what                do    t
    <forest n='ex5' type='syntactic derivation'>
       <eTree n='Stage 1' id='S1SBAR' label="S'">
          <eTree id='S1COMP' label="COMP"><eLeaf id='S1E' label="e"/></eTree>
          <eTree id='S1S' label="S">
             <eTree id='S1NP1' label="NP"><eLeaf label="you"/></eTree>
             <eTree id='S1VP' label="VP">
                <eTree id='S1V' label="V"><eLeaf label="do"/></eTree>
                <eTree id='S1NP2' label="NP">
                   <eLeaf id='S1WH' label="what"/>
                   </eTree>
                </eTree>
             </eTree>
          </eTree>
       <eTree n='Stage 2' id='S2SBAR' corresp='s1sbar' label="S'">
          <eTree id='S2COMP' corresp='s1comp' label="COMP">
             <eTree copyOf='s1np2' corresp='s1e' label="NP"></eTree>
             </eTree>
          <eTree id='S2S' corresp='s1s' label="S">
             <eTree id='S2NP1' copyOf='s1np1' label="NP"></eTree>
             <eTree id='S2VP' corresp='s1vp' label="VP">
                <eTree id='S2V' copyOf='s1v' label="V"></eTree>
                <eTree id='S2NP2' corresp='s1np2' label="NP">
                  <eLeaf corresp='s1wh' label="t"/>
                  </eTree>
                </eTree>
             </eTree>
          </eTree>
       </forest>
In this markup, we have used `copyOf` attributes to provide virtual copies of elements in the tree representing the second stage of the derivation that also occur in the first stage, and the `corresp` attribute (see section 14.4 Correspondence and Alignment) to link those elements in the second stage with corresponding elements in the first stage that are not copies of them. If a group of forests (e.g. a full grammatical derivation including syntactic, semantic and phonological subderivations) is to be articulated, the grouping element `<forestGrp>` may be used. The formal declarations of the `<eTree>`, `<triangle>`, `<eLeaf>`, `<forest>` and `<forestGrp>` elements are as follows.
    <!-- 21.3: Trees (alternate method)-->
    <!ELEMENT eTree %om.RR; ((eTree |  triangle | eLeaf )*)>
    <!ATTLIST eTree
          %a.global;
          label CDATA #IMPLIED
          value IDREF #IMPLIED
          TEIform CDATA 'eTree'  >
    <!ELEMENT triangle %om.RR; ((eTree | triangle | eLeaf)*)>
    <!ATTLIST triangle
          %a.global;
          label CDATA #IMPLIED
          value IDREF #IMPLIED
          TEIform CDATA 'triangle'  >
    <!ELEMENT eLeaf %om.RO; EMPTY>
    <!ATTLIST eLeaf
          %a.global;
          label CDATA #IMPLIED
          value IDREF #IMPLIED
          TEIform CDATA 'eLeaf'  >
    <!ELEMENT forest %om.RR; ((tree | eTree | triangle)+)>
    <!ATTLIST forest
          %a.global;
          type CDATA #IMPLIED
          TEIform CDATA 'forest'  >
    <!ELEMENT forestGrp %om.RR; ((forest)+)>
    <!ATTLIST forestGrp
          %a.global;
          type CDATA #IMPLIED
          TEIform CDATA 'forestGrp'  >
    <!-- end of 21.3-->

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